Os07g0296200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os07g0296200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.32 | 0.302 | 10.4 | -0.615 | 0.377 | -0.437 | 0.183 | -0.764 | 0.118 | 10.7 | 22.2 | 1039 | -- | -- |
| 42.76 | 0.305 | 10.5 | -0.837 | 0.398 | -0.426 | 0.0275 | -- | 0.0619 | 10.3 | 22.3 | 786 | -- | -- |
| 41.45 | 0.3 | 10.4 | -0.621 | 0.378 | -0.436 | -- | -0.728 | 0.116 | 10.8 | 22.2 | 1041 | -- | -- |
| 42.73 | 0.304 | 10.5 | -0.849 | 0.393 | -0.425 | -- | -- | 0.0605 | 10.6 | 22.2 | 868 | -- | -- |
| 47.88 | 0.322 | 10.4 | -0.631 | -- | -0.408 | -- | -0.723 | 0.131 | -- | 22.2 | 1506 | -- | -- |
| 50.58 | 0.333 | 10.4 | -0.71 | 0.308 | -- | 0.00244 | -- | 0.205 | 10.5 | -- | -- | -- | -- |
| 50.58 | 0.333 | 10.4 | -0.71 | 0.308 | -- | -- | -- | 0.205 | 10.5 | -- | -- | -- | -- |
| 49.56 | 0.328 | 10.5 | -0.852 | -- | -0.418 | -- | -- | 0.0624 | -- | 22.3 | 1548 | -- | -- |
| 60.38 | 0.362 | 10.4 | -- | 0.356 | -0.271 | -- | -- | 0.199 | 10.5 | 22.3 | 730 | -- | -- |
| 56.41 | 0.351 | 10.4 | -0.716 | -- | -- | -- | -- | 0.203 | -- | -- | -- | -- | -- |
| 63.87 | 0.374 | 10.4 | -- | 0.313 | -- | -- | -- | 0.284 | 10.7 | -- | -- | -- | -- |
| 66.68 | 0.382 | 10.4 | -- | -- | -0.219 | -- | -- | 0.226 | -- | 22.3 | 1548 | -- | -- |
| 69.92 | 0.39 | 10.4 | -- | -- | -- | -- | -- | 0.283 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.42 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 9 |
| 3 | 42.43 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 7 | 42.46 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 7 |
| 26 | 42.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 43 | 42.60 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 20 |
| 51 | 42.63 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 60 | 42.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 70 | 42.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 14 |
| 72 | 42.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 89 | 42.74 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 10 |
| 97 | 42.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 6 |
| 109 | 42.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 18 |
| 111 | 42.77 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 112 | 42.77 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 151 | 42.79 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 7 |
| 199 | 42.82 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 234 | 42.83 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 22 |
| 342 | 42.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 347 | 42.90 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 369 | 42.92 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 382 | 42.92 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 469 | 42.97 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |
| 520 | 42.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 6 |
| 558 | 43.01 | wind | 1 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 587 | 43.01 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 723 | 43.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 825 | 43.14 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 1 |