BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0296200 Os07g0296200|AK064362
         (394 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G50300.1  | chr1:18628818-18631662 REVERSE LENGTH=373          313   7e-86
AT5G58470.1  | chr5:23638566-23640854 REVERSE LENGTH=423           60   3e-09
AT5G16260.1  | chr5:5311363-5315496 FORWARD LENGTH=520             49   4e-06

>AT1G50300.1 | chr1:18628818-18631662 REVERSE LENGTH=373
          Length = 372

 Score =  313 bits (803), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 166/322 (51%), Positives = 187/322 (58%), Gaps = 14/322 (4%)

Query: 1   MAGFMSRGPPNGSVYVCNLPPGTDETMLAEYFGTIGLLKKDKRTGRPKIWIYRDKVTNEP 60
           MAG+    P NGSVYV NLP GTDE MLA+YFGTIGLLK+DKRTG PK+W+YRDK T+EP
Sbjct: 1   MAGY----PTNGSVYVSNLPLGTDENMLADYFGTIGLLKRDKRTGTPKVWLYRDKETDEP 56

Query: 61  KGDATVTYEDPHAASAAVEWFNNKDFHGSTIQVHIAESKNKDMNDSSATASLNNSAELGG 120
           KGDATVTYEDPHAA AAVEWFNNKDFHG+TI V +AESKNK+  D+      +     GG
Sbjct: 57  KGDATVTYEDPHAALAAVEWFNNKDFHGNTIGVFMAESKNKNAGDAVEFVEFD-----GG 111

Query: 121 QDELDNXXXXXXXXXXXXXKAWQQDGDWLCPNTSCGNVNFAFRGVCNLCXXXXXXXXXXX 180
            +E +              K WQQDGDW+CPNTSC NVNFAFRGVCN C           
Sbjct: 112 AEETNGGAGRGRGQADSSAKPWQQDGDWMCPNTSCTNVNFAFRGVCNRC----GTARPAG 167

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFGPNDWPCPMCGNINWAKRMKCNICN 240
                                            LFGPNDW CPMCGN+NWAKR+KCNICN
Sbjct: 168 ASGGSMGAGRGRGRGGGADGGAPGKQPSGAPTGLFGPNDWACPMCGNVNWAKRLKCNICN 227

Query: 241 TTKPGHNEXXXXXXXXXXYXXXXXXXXXXXXXXXXXXXXXXXXMYDEFGNLKKKFRAKTQ 300
           T KPG NE          Y                        MYDEFGNLKKK+R KT 
Sbjct: 228 TNKPGQNEGGVRGGRGGGYKELDEQELEETKRRRREAEEDDGEMYDEFGNLKKKYRVKTN 287

Query: 301 QTENAPTLPGSGRAGWEVEQRG 322
           Q +  P +  +GRAGWEVE+ G
Sbjct: 288 QADTRPAV-AAGRAGWEVEELG 308



>AT5G58470.1 | chr5:23638566-23640854 REVERSE LENGTH=423
          Length = 422

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 5/89 (5%)

Query: 14  VYVCNLPPGTDETMLAEYFGTIGLLKKDK-RTGRPKIWIYRDKV-TNEP---KGDATVTY 68
           +Y+ NLPP      L + FG IG + + K + G    W Y  K+ T+E    KGDA + Y
Sbjct: 282 IYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGYKDQWPYNIKIYTDEKGNYKGDACLAY 341

Query: 69  EDPHAASAAVEWFNNKDFHGSTIQVHIAE 97
           EDP AA +A  +FNN +  G+ I V +AE
Sbjct: 342 EDPSAAHSAGGFFNNYEMRGNKISVTMAE 370



>AT5G16260.1 | chr5:5311363-5315496 FORWARD LENGTH=520
          Length = 519

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 11  NGSVYVCNLPPGTDETMLAEYFGTIGLLKKDKRTGRPKIWIYRDKVTNEPKGDATVTYED 70
           N  +YV  LP       +AE F   G++K+D  TG+P+I +Y DK T + KGDA ++Y  
Sbjct: 275 NPHIYVNGLPDDVTIEEVAEVFSKCGIIKEDD-TGKPRIKLYSDKATGKLKGDALISYMK 333

Query: 71  PHAASAAVEWFN 82
             +   A++  +
Sbjct: 334 EPSVDLAIKILD 345



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.133    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,184,422
Number of extensions: 242763
Number of successful extensions: 766
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 772
Number of HSP's successfully gapped: 5
Length of query: 394
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 293
Effective length of database: 8,337,553
Effective search space: 2442903029
Effective search space used: 2442903029
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 113 (48.1 bits)