BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0296200 Os07g0296200|AK064362
         (394 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0296200  RNA-binding region RNP-1 (RNA recognition moti...   543   e-155
Os09g0299500  RNA-binding region RNP-1 (RNA recognition moti...   267   1e-71

>Os07g0296200 RNA-binding region RNP-1 (RNA recognition motif) domain containing
           protein
          Length = 394

 Score =  543 bits (1400), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 278/394 (70%), Positives = 278/394 (70%)

Query: 1   MAGFMSRGPPNGSVYVCNLPPGTDETMLAEYFGTIGLLKKDKRTGRPKIWIYRDKVTNEP 60
           MAGFMSRGPPNGSVYVCNLPPGTDETMLAEYFGTIGLLKKDKRTGRPKIWIYRDKVTNEP
Sbjct: 1   MAGFMSRGPPNGSVYVCNLPPGTDETMLAEYFGTIGLLKKDKRTGRPKIWIYRDKVTNEP 60

Query: 61  KGDATVTYEDPHAASAAVEWFNNKDFHGSTIQVHIAESKNKDMNDSSATASLNNSAELGG 120
           KGDATVTYEDPHAASAAVEWFNNKDFHGSTIQVHIAESKNKDMNDSSATASLNNSAELGG
Sbjct: 61  KGDATVTYEDPHAASAAVEWFNNKDFHGSTIQVHIAESKNKDMNDSSATASLNNSAELGG 120

Query: 121 QDELDNXXXXXXXXXXXXXKAWQQDGDWLCPNTSCGNVNFAFRGVCNLCXXXXXXXXXXX 180
           QDELDN             KAWQQDGDWLCPNTSCGNVNFAFRGVCNLC           
Sbjct: 121 QDELDNGEGRGRGRGDGPGKAWQQDGDWLCPNTSCGNVNFAFRGVCNLCGAARPAGVSGS 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFGPNDWPCPMCGNINWAKRMKCNICN 240
                                            LFGPNDWPCPMCGNINWAKRMKCNICN
Sbjct: 181 SAGGGGRGRGRGSDDARGGSRAAAAAAVGGPPGLFGPNDWPCPMCGNINWAKRMKCNICN 240

Query: 241 TTKPGHNEXXXXXXXXXXYXXXXXXXXXXXXXXXXXXXXXXXXMYDEFGNLKKKFRAKTQ 300
           TTKPGHNE          Y                        MYDEFGNLKKKFRAKTQ
Sbjct: 241 TTKPGHNEGGVRGGRGGGYKELDEEELEEVKRRRKEAEEDDGEMYDEFGNLKKKFRAKTQ 300

Query: 301 QTENAPTLPGSGRAGWEVEQRGSTGREGKERSRDQGRDHDYDERDSXXXXXXXXXXXXXX 360
           QTENAPTLPGSGRAGWEVEQRGSTGREGKERSRDQGRDHDYDERDS              
Sbjct: 301 QTENAPTLPGSGRAGWEVEQRGSTGREGKERSRDQGRDHDYDERDSRNRDRGSHGRERRR 360

Query: 361 XXXXXXXXXXXTGRDHSYERSWERGTERDHDRYR 394
                      TGRDHSYERSWERGTERDHDRYR
Sbjct: 361 SRDREKERGRDTGRDHSYERSWERGTERDHDRYR 394



>Os09g0299500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
           protein
          Length = 194

 Score =  267 bits (682), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 136/169 (80%), Positives = 141/169 (83%), Gaps = 4/169 (2%)

Query: 1   MAGFMSRGPPNGSVYVCNLPPGTDETMLAEYFGTIGLLKKDKRTGRPKIWIYRDKVTNEP 60
           MAG+MSRGPPNGSVYVCNLPPGTDETMLA+YFGTIGLLKKDKRTGRPKIWIYRDKVTNEP
Sbjct: 1   MAGYMSRGPPNGSVYVCNLPPGTDETMLADYFGTIGLLKKDKRTGRPKIWIYRDKVTNEP 60

Query: 61  KGDATVTYEDPHAASAAVEWFNNKDFHGSTIQVHIAESKNKDMNDSSATASLNNSAELGG 120
           KGDATVTYEDPHAASAAVEWFNNKDFHGSTIQVHIAESKNKD  D+S  ASLNNSA LGG
Sbjct: 61  KGDATVTYEDPHAASAAVEWFNNKDFHGSTIQVHIAESKNKDTYDNS--ASLNNSAGLGG 118

Query: 121 QDELDNXXXXXXXXXXXXXKAWQQDGDWLCPNTSCGNVNFAFRGVCNLC 169
           QDELDN             KAWQQDGDWLCPNT   +V    R  C+L 
Sbjct: 119 QDELDNGAGRGRGHGDGPGKAWQQDGDWLCPNTR--SVLIGKRLPCHLI 165



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.133    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,540,342
Number of extensions: 391388
Number of successful extensions: 1092
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1088
Number of HSP's successfully gapped: 3
Length of query: 394
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 291
Effective length of database: 11,657,759
Effective search space: 3392407869
Effective search space used: 3392407869
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)