BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0298100 Os09g0298100|J065106F19
         (42 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0298100  Similar to Pyrophosphate--fructose 6-phosphate...    86   6e-18
Os08g0345700  Similar to Fructose-6-phosphate 1-phosphotrans...    62   7e-11

>Os09g0298100 Similar to Pyrophosphate--fructose 6-phosphate
          1-phosphotransferase alpha subunit (EC 2.7.1.90) (PFP)
          (6-phosphofructokinase, pyrophosphate dependent)
          (Pyrophosphate-dependent 6-phosphofructose-1-kinase)
          (PPi-PFK)
          Length = 42

 Score = 85.9 bits (211), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 42/42 (100%), Positives = 42/42 (100%)

Query: 1  QVVGVPVSLNGDLKNQFVETTVGFDTVCKVSLAGYAANKIPI 42
          QVVGVPVSLNGDLKNQFVETTVGFDTVCKVSLAGYAANKIPI
Sbjct: 1  QVVGVPVSLNGDLKNQFVETTVGFDTVCKVSLAGYAANKIPI 42



>Os08g0345700 Similar to Fructose-6-phosphate 1-phosphotransferase (Fragment)
          Length = 617

 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 29/31 (93%), Positives = 31/31 (100%)

Query: 1   QVVGVPVSLNGDLKNQFVETTVGFDTVCKVS 31
           +VVGVPVSLNGDLKNQFVETTVGFDTVCKV+
Sbjct: 208 KVVGVPVSLNGDLKNQFVETTVGFDTVCKVN 238



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,265,414
Number of extensions: 25802
Number of successful extensions: 42
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 2
Length of query: 42
Length of database: 17,035,801
Length adjustment: 16
Effective length of query: 26
Effective length of database: 16,200,377
Effective search space: 421209802
Effective search space used: 421209802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)