BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0250300 Os09g0250300|Os09g0250300
         (92 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0250300  Hypothetical protein                                137   1e-33
Os07g0469100  Similar to Thylakoid membrane phosphoprotein 1...    67   2e-12

>Os09g0250300 Hypothetical protein
          Length = 92

 Score =  137 bits (346), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/71 (100%), Positives = 71/71 (100%)

Query: 22 RWLARAAAGGRKEGTRRVVEVGPETARQWAKVEDKYAVTAIGVAALVGLWTAIGAIKAID 81
          RWLARAAAGGRKEGTRRVVEVGPETARQWAKVEDKYAVTAIGVAALVGLWTAIGAIKAID
Sbjct: 22 RWLARAAAGGRKEGTRRVVEVGPETARQWAKVEDKYAVTAIGVAALVGLWTAIGAIKAID 81

Query: 82 RRQASTFARRA 92
          RRQASTFARRA
Sbjct: 82 RRQASTFARRA 92



>Os07g0469100 Similar to Thylakoid membrane phosphoprotein 14 kDa, chloroplast
           precursor
          Length = 150

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 41/53 (77%), Gaps = 5/53 (9%)

Query: 34  EGTRRVVEVGPETARQ----WAKVEDKYAVTAIGVAALVGLWTAIGAIKAIDR 82
           +GT    EV PE  +     WAKVEDKYAVTAIGVAALVGLWTAIGAIKAIDR
Sbjct: 50  DGTGSETEV-PEVVKAAQDAWAKVEDKYAVTAIGVAALVGLWTAIGAIKAIDR 101



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.130    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,365,379
Number of extensions: 73549
Number of successful extensions: 390
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 2
Length of query: 92
Length of database: 17,035,801
Length adjustment: 61
Effective length of query: 31
Effective length of database: 13,850,747
Effective search space: 429373157
Effective search space used: 429373157
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)