BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0244900 Os09g0244900|AK099662
         (174 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0244900  Transport protein particle (TRAPP) component, ...   367   e-102
Os07g0291100  Transport protein particle (TRAPP) component, ...   340   4e-94

>Os09g0244900 Transport protein particle (TRAPP) component, Bet3 family protein
          Length = 174

 Score =  367 bits (942), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/174 (100%), Positives = 174/174 (100%)

Query: 1   MVREVAESCVDGVVMEMVAAYCGRFYAAKPELAARRIEAIGFQVGHQLTERYTMERPRFS 60
           MVREVAESCVDGVVMEMVAAYCGRFYAAKPELAARRIEAIGFQVGHQLTERYTMERPRFS
Sbjct: 1   MVREVAESCVDGVVMEMVAAYCGRFYAAKPELAARRIEAIGFQVGHQLTERYTMERPRFS 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRVSIDPSVESMDATDN 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRVSIDPSVESMDATDN
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRVSIDPSVESMDATDN 120

Query: 121 DSATLGDSAAQTTSMLLYFPCGIIRGALTNLGISCSVTADMSNLPACELHYSFS 174
           DSATLGDSAAQTTSMLLYFPCGIIRGALTNLGISCSVTADMSNLPACELHYSFS
Sbjct: 121 DSATLGDSAAQTTSMLLYFPCGIIRGALTNLGISCSVTADMSNLPACELHYSFS 174



>Os07g0291100 Transport protein particle (TRAPP) component, Bet3 family protein
          Length = 175

 Score =  340 bits (871), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 160/169 (94%), Positives = 163/169 (96%)

Query: 1   MVREVAESCVDGVVMEMVAAYCGRFYAAKPELAARRIEAIGFQVGHQLTERYTMERPRFS 60
           M REVAESCVDGVVM+MVAAYCG FYAAKPELAARRIEAIGFQVGHQLTERYTMERPRFS
Sbjct: 1   MGREVAESCVDGVVMQMVAAYCGGFYAAKPELAARRIEAIGFQVGHQLTERYTMERPRFS 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRVSIDPSVESMDATDN 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDN FRWLTRVS+DPSVESMDAT+N
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNHFRWLTRVSVDPSVESMDATEN 120

Query: 121 DSATLGDSAAQTTSMLLYFPCGIIRGALTNLGISCSVTADMSNLPACEL 169
           DS TLGDSAAQTTSMLLYFPCGIIRGALTNLGISCSVTADMSNLPAC  
Sbjct: 121 DSTTLGDSAAQTTSMLLYFPCGIIRGALTNLGISCSVTADMSNLPACSF 169



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,449,307
Number of extensions: 190899
Number of successful extensions: 582
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 582
Number of HSP's successfully gapped: 2
Length of query: 174
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 80
Effective length of database: 12,127,685
Effective search space: 970214800
Effective search space used: 970214800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 152 (63.2 bits)