FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0291100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transport protein particle (TRAPP) component, Bet3 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.015) R2 : 0.0399
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.138 (0.0317) R2dN8 : 0.0515 R2N8 : 0.0399
σ : 0.283
deviance : 36.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.79 0.198 11.1 -0.213 0.185 0.857 -0.426 -2.4 -0.0554 3.9 11.71 604 -- --
21.93 0.218 11.1 0.21 0.181 0.773 -0.33 -- 0.0629 2.97 4.254 612 -- --
18.16 0.198 11.1 -0.219 0.101 0.799 -- -2.29 -0.0525 3.26 13.95 783 -- --
22.26 0.22 11.1 0.208 0.19 0.812 -- -- 0.0581 3.63 13.7 604 -- --
18.37 0.2 11.2 -0.264 -- 0.799 -- -2.32 -0.0632 -- 14.01 948 -- --
29.56 0.255 11.1 0.388 0.192 -- -0.359 -- 0.18 23.6 -- -- -- --
30.11 0.257 11.1 0.403 0.194 -- -- -- 0.181 23.3 -- -- -- --
22.83 0.223 11.1 0.196 -- 0.778 -- -- 0.0593 -- 12.32 888 -- --
23.28 0.225 11.1 -- 0.204 0.906 -- -- 0.0235 4.05 13.06 614 -- --
32.47 0.266 11.1 0.408 -- -- -- -- 0.183 -- -- -- -- --
34.4 0.274 11.1 -- 0.199 -- -- -- 0.136 23.4 -- -- -- --
23.72 0.227 11.1 -- -- 0.854 -- -- 0.0265 -- 7.484 916 -- --
36.87 0.283 11.1 -- -- -- -- -- 0.138 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.16 temperature 25 1440 < th dose dependent rect. 21 1
3 17.27 temperature 25 1440 < th dose dependent rect. 19 11
36 17.43 temperature 25 1440 < th dose dependent sin 11 NA
75 17.57 temperature 10 1440 > th dose dependent rect. 19 11
139 17.67 temperature 10 720 > th dose dependent rect. 1 23
148 17.68 temperature 15 720 > th dose dependent rect. 19 22
155 17.70 temperature 25 1440 < th dose dependent rect. 3 3
169 17.71 temperature 25 1440 < th dose dependent rect. 1 5
191 17.73 temperature 10 1440 > th dose dependent sin 11 NA
192 17.73 temperature 10 1440 > th dose dependent rect. 21 1
244 17.78 temperature 10 1440 > th dose dependent rect. 3 3
245 17.78 temperature 10 1440 > th dose dependent rect. 20 4
317 17.82 temperature 25 1440 < th dose dependent rect. 1 9
344 17.83 temperature 10 720 > th dose dependent rect. 16 23
370 17.85 temperature 15 720 > th dose dependent rect. 12 23
402 17.87 temperature 10 720 > th dose dependent rect. 10 23
428 17.89 temperature 10 720 > th dose dependent no NA NA
448 17.89 temperature 15 720 > th dose dependent rect. 23 23
467 17.90 temperature 30 720 < th dose dependent rect. 22 22
547 17.95 temperature 15 720 > th dose dependent rect. 14 23
683 18.04 temperature 15 720 > th dose dependent rect. 5 23
703 18.06 temperature 30 720 < th dose dependent no NA NA
755 18.08 temperature 30 720 < th dose dependent rect. 2 23
770 18.09 temperature 30 720 < th dose dependent rect. 4 23
794 18.11 temperature 20 1440 < th dose independent rect. 21 17
825 18.12 temperature 25 1440 < th dose dependent rect. 8 23
860 18.14 temperature 20 1440 > th dose independent rect. 21 17
955 18.19 temperature 20 1440 < th dose independent rect. 21 14
973 18.20 temperature 20 1440 < th dose independent sin 7 NA