BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0291100 Os07g0291100|AK063779
         (175 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05000.1  | chr3:1387444-1388697 REVERSE LENGTH=174            290   3e-79

>AT3G05000.1 | chr3:1387444-1388697 REVERSE LENGTH=174
          Length = 173

 Score =  290 bits (742), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 134/174 (77%), Positives = 152/174 (87%), Gaps = 2/174 (1%)

Query: 1   MGREVAESCVDGVVMQMVAAYCGGFYAAKPELAARRIEAIGFQVGHQLTERYTMERPRFS 60
           MGREVAESCVD ++M+MVA Y G FYA KPELAARRIEAIG+QVGHQL+ERYTMERPRFS
Sbjct: 1   MGREVAESCVDTMLMEMVAMYSGRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFS 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNHFRWLTRVSVDPSVESMDATEN 120
           DHLEAIKFICKDFWSE+FKKQIDNLKTNHRGTFVLQDN FRWL+RVS+DPS E  + T++
Sbjct: 61  DHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNKFRWLSRVSIDPSSE--NETQD 118

Query: 121 DSTTLGDSAAQTTSMLLYFPCGIIRGALTNLGISCSVTADMSNLPACSFVVRIK 174
            ST     AAQ  SM LYFPCGIIRG L+NLGI C+V+AD+S+LP CSFV+R+K
Sbjct: 119 PSTPGESKAAQAVSMYLYFPCGIIRGVLSNLGIPCAVSADISSLPTCSFVIRVK 172



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,557,126
Number of extensions: 126333
Number of successful extensions: 255
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 83
Effective length of database: 8,584,297
Effective search space: 712496651
Effective search space used: 712496651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 108 (46.2 bits)