BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0133700 Os09g0133700|AK101816
(347 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0133700 ATPase, BadF/BadG/BcrA/BcrD type domain contai... 654 0.0
Os07g0147700 ATPase, BadF/BadG/BcrA/BcrD type domain contai... 120 1e-27
>Os09g0133700 ATPase, BadF/BadG/BcrA/BcrD type domain containing protein
Length = 347
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/347 (94%), Positives = 327/347 (94%)
Query: 1 MGGYENXXXXXXXXXXXXXXXXXXXXTTNTVCVCLPVAMPPPESPGAVPVLSRAVAGCSN 60
MGGYEN TTNTVCVCLPVAMPPPESPGAVPVLSRAVAGCSN
Sbjct: 1 MGGYENGDSPAAAAGDGGVILGVDGGTTNTVCVCLPVAMPPPESPGAVPVLSRAVAGCSN 60
Query: 61 RNSVGESAALETLEQVMAQALTLVNTDRSAVRAVCLAVSGVNHPSDQQRMLDWIRDLFPG 120
RNSVGESAALETLEQVMAQALTLVNTDRSAVRAVCLAVSGVNHPSDQQRMLDWIRDLFPG
Sbjct: 61 RNSVGESAALETLEQVMAQALTLVNTDRSAVRAVCLAVSGVNHPSDQQRMLDWIRDLFPG 120
Query: 121 HVKFYVENDAVAALASGTMGKLHGCVLIAGTGSIAYGVTEDGKVARAAGAGPVLGDWGSG 180
HVKFYVENDAVAALASGTMGKLHGCVLIAGTGSIAYGVTEDGKVARAAGAGPVLGDWGSG
Sbjct: 121 HVKFYVENDAVAALASGTMGKLHGCVLIAGTGSIAYGVTEDGKVARAAGAGPVLGDWGSG 180
Query: 181 YGIAAQALTAVVKAYDGRGPHTNLTREILRKLELSSPDELIGWTYADPSWARIAALVPVV 240
YGIAAQALTAVVKAYDGRGPHTNLTREILRKLELSSPDELIGWTYADPSWARIAALVPVV
Sbjct: 181 YGIAAQALTAVVKAYDGRGPHTNLTREILRKLELSSPDELIGWTYADPSWARIAALVPVV 240
Query: 241 VSSAEDGDEVANKILHDSVQELADSVVAVVRRLKLCGEDGMDQFPLVLVGGVLEGNKKWN 300
VSSAEDGDEVANKILHDSVQELADSVVAVVRRLKLCGEDGMDQFPLVLVGGVLEGNKKWN
Sbjct: 241 VSSAEDGDEVANKILHDSVQELADSVVAVVRRLKLCGEDGMDQFPLVLVGGVLEGNKKWN 300
Query: 301 ISGEVVRCISKVFPGVHPIRPEVEPAIGAALLAWNHHRKGLKLENGS 347
ISGEVVRCISKVFPGVHPIRPEVEPAIGAALLAWNHHRKGLKLENGS
Sbjct: 301 ISGEVVRCISKVFPGVHPIRPEVEPAIGAALLAWNHHRKGLKLENGS 347
>Os07g0147700 ATPase, BadF/BadG/BcrA/BcrD type domain containing protein
Length = 111
Score = 120 bits (302), Expect = 1e-27, Method: Composition-based stats.
Identities = 61/103 (59%), Positives = 75/103 (72%), Gaps = 9/103 (8%)
Query: 85 NTDRSAVRAVCLAVS---------GVNHPSDQQRMLDWIRDLFPGHVKFYVENDAVAALA 135
+T + + VCL ++ H + Q++L + R++FP HVK +VENDAVAALA
Sbjct: 1 STKNAGLAEVCLLITIYLTEQERFAAIHKTLLQQILLFPREIFPSHVKLFVENDAVAALA 60
Query: 136 SGTMGKLHGCVLIAGTGSIAYGVTEDGKVARAAGAGPVLGDWG 178
SGTMGKLHGCVLIAGTG+IAYG T DG+ ARAAGAGPVLGDWG
Sbjct: 61 SGTMGKLHGCVLIAGTGTIAYGFTRDGREARAAGAGPVLGDWG 103
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,317,761
Number of extensions: 521944
Number of successful extensions: 1953
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1953
Number of HSP's successfully gapped: 2
Length of query: 347
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 245
Effective length of database: 11,709,973
Effective search space: 2868943385
Effective search space used: 2868943385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)