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Os09g0133700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : ATPase, BadF/BadG/BcrA/BcrD type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0161) R2 : 0.806
β1 : -1.22 (0.059) R2dD : 0.188 R2D : 0.176
β2 : 1.49 (0.0395) R2dC : 0.601 R2C : 0.617
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.221 (0.0344) R2dN8 : 0.0236 R2N8 : 0.000949
σ : 0.303
deviance : 41.79
__
_____
C
peak time of C : 14.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.34 0.271 10.8 -1.47 1.26 0.674 -0.927 -1.39 -0.323 14 24.5 242 -- --
33.97 0.271 10.8 -1.29 1.29 0.547 -1.08 -- -0.273 14.1 24.43 252 -- --
36.12 0.28 10.8 -1.58 1.26 0.731 -- -2.57 -0.337 14.2 25.14 211 -- --
38.2 0.288 10.8 -1.3 1.31 0.467 -- -- -0.268 14.2 24.4 259 -- --
97.59 0.463 10.9 -1.97 -- 1.91 -- -3.76 -0.555 -- 24.34 87 -- --
38.88 0.292 10.8 -1.19 1.49 -- -0.906 -- -0.216 14.5 -- -- -- --
41.79 0.303 10.8 -1.22 1.49 -- -- -- -0.221 14.6 -- -- -- --
104.9 0.479 10.8 -1.51 -- 1.63 -- -- -0.435 -- 24.1 61 -- --
80.06 0.417 10.7 -- 1.47 0.241 -- -- -0.0832 14.5 28.3 228 -- --
171.21 0.611 10.8 -1.28 -- -- -- -- -0.258 -- -- -- -- --
80.76 0.42 10.7 -- 1.51 -- -- -- -0.0855 14.6 -- -- -- --
163.9 0.598 10.8 -- -- 1.41 -- -- -0.238 -- 24.28 24 -- --
214.38 0.683 10.7 -- -- -- -- -- -0.116 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.26 radiation 20.0 270 < th dose dependent rect. 16 14
2 29.46 temperature 30.0 270 < th dose independent rect. 16 14
4 29.59 humidity 50.0 270 > th dose independent rect. 16 14
5 29.78 temperature 30.0 270 < th dose independent rect. 1 20
9 29.99 temperature 30.0 270 < th dose independent rect. 10 11
11 30.05 temperature 30.0 270 < th dose independent rect. 2 18
13 30.17 temperature 10.0 720 > th dose dependent rect. 6 3
18 30.28 temperature 10.0 270 > th dose dependent rect. 6 20
24 30.48 radiation 40.0 720 < th dose independent rect. 6 3
44 30.81 radiation 10.0 270 < th dose independent rect. 16 14
47 30.86 precipitation 0.1 270 < th dose independent rect. 6 11
48 30.86 precipitation 0.1 270 < th dose dependent rect. 6 11
49 30.90 radiation 1.0 90 > th dose independent rect. 7 12
62 30.93 radiation 40.0 720 < th dose independent rect. 21 12
63 30.97 temperature 10.0 270 > th dose dependent rect. 11 14
66 31.02 temperature 10.0 270 > th dose independent rect. 6 11
67 31.02 atmosphere 1015.0 270 < th dose independent rect. 6 11
68 31.02 temperature 10.0 270 > th dose independent rect. 17 13
73 31.06 wind 9.0 270 < th dose independent rect. 17 13
78 31.13 wind 9.0 270 < th dose independent rect. 6 11
79 31.14 temperature 10.0 90 > th dose dependent rect. 7 11
82 31.19 temperature 30.0 270 < th dose independent rect. 14 7
83 31.20 atmosphere 995.0 270 > th dose independent rect. 17 13
87 31.26 radiation 1.0 720 < th dose dependent rect. 18 3
91 31.28 temperature 10.0 720 > th dose dependent rect. 6 11
95 31.34 temperature 30.0 270 < th dose dependent rect. 11 9
102 31.43 atmosphere 995.0 720 > th dose independent rect. 18 3
106 31.46 temperature 10.0 720 > th dose independent rect. 18 3
107 31.46 humidity 50.0 720 > th dose independent rect. 18 3
108 31.46 radiation 20.0 720 < th dose independent rect. 18 3
112 31.46 temperature 10.0 720 > th dose independent rect. 21 21
113 31.47 wind 9.0 720 < th dose independent rect. 18 3
114 31.47 radiation 1.0 720 < th dose dependent rect. 18 11
120 31.51 radiation 40.0 720 < th dose dependent rect. 18 3
122 31.52 radiation 40.0 720 < th dose independent rect. 15 18
129 31.57 wind 1.0 720 > th dose independent rect. 18 3
130 31.57 wind 9.0 720 < th dose independent rect. 6 3
131 31.57 temperature 10.0 720 > th dose independent rect. 6 3
132 31.57 humidity 50.0 720 > th dose independent rect. 6 3
133 31.57 atmosphere 995.0 720 > th dose independent rect. 6 3
134 31.57 atmosphere 1015.0 720 < th dose independent rect. 6 3
136 31.57 temperature 10.0 720 > th dose independent rect. 9 21
142 31.59 precipitation 0.1 720 < th dose independent rect. 6 3
143 31.59 precipitation 0.1 720 < th dose dependent rect. 6 3
155 31.64 temperature 30.0 90 < th dose dependent rect. 15 6
156 31.65 precipitation 0.1 720 < th dose independent rect. 21 21
157 31.65 precipitation 0.1 720 < th dose dependent rect. 21 21
160 31.67 precipitation 0.1 270 < th dose independent rect. 12 13
162 31.67 precipitation 0.1 270 < th dose dependent rect. 12 13
169 31.70 temperature 10.0 720 > th dose dependent rect. 12 6
170 31.71 humidity 70.0 10 > th dose independent rect. 18 13
172 31.73 temperature 10.0 720 > th dose dependent rect. 14 3
176 31.75 radiation 1.0 720 < th dose independent rect. 18 3
180 31.78 precipitation 0.1 270 < th dose independent rect. 17 13
185 31.78 precipitation 0.1 270 < th dose dependent rect. 17 13
189 31.82 radiation 1.0 270 < th dose dependent rect. 2 19
192 31.83 temperature 10.0 720 > th dose independent rect. 9 12
193 31.83 temperature 10.0 720 > th dose independent rect. 21 12
194 31.83 humidity 50.0 720 > th dose independent rect. 21 12
195 31.83 atmosphere 995.0 720 > th dose independent rect. 21 12
201 31.84 precipitation 0.1 720 < th dose independent rect. 5 13
202 31.84 precipitation 0.1 720 < th dose dependent rect. 5 13
209 31.87 wind 9.0 720 < th dose independent rect. 21 12
213 31.88 precipitation 0.1 720 < th dose independent rect. 12 6
221 31.88 precipitation 0.1 720 < th dose dependent rect. 12 6
233 31.94 temperature 10.0 10 > th dose dependent rect. 7 21
242 31.97 temperature 10.0 10 > th dose dependent rect. 12 16
243 31.98 temperature 10.0 270 > th dose independent rect. 1 11
245 31.98 atmosphere 995.0 270 > th dose independent rect. 1 11
246 31.98 atmosphere 1015.0 270 < th dose independent rect. 1 11
247 31.98 temperature 10.0 270 > th dose independent rect. 12 13
254 32.00 wind 9.0 270 < th dose independent rect. 12 13
257 32.01 precipitation 0.1 720 < th dose independent rect. 18 3
260 32.01 precipitation 0.1 720 < th dose dependent rect. 18 3
270 32.04 temperature 30.0 720 < th dose independent rect. 9 4
280 32.06 wind 9.0 270 < th dose independent rect. 1 11
282 32.07 atmosphere 1015.0 720 < th dose independent rect. 18 3
290 32.09 temperature 30.0 270 < th dose independent rect. 8 23
298 32.11 atmosphere 995.0 720 > th dose independent rect. 18 11
306 32.12 temperature 10.0 720 > th dose independent rect. 18 11
309 32.12 radiation 20.0 720 < th dose independent rect. 18 11
312 32.12 precipitation 0.1 720 < th dose independent rect. 21 12
313 32.12 temperature 10.0 720 > th dose independent rect. 5 13
315 32.12 atmosphere 1015.0 720 < th dose independent rect. 5 13
319 32.12 precipitation 0.1 720 < th dose dependent rect. 21 12
321 32.13 wind 9.0 720 < th dose independent rect. 18 11
322 32.13 precipitation 0.1 270 < th dose independent rect. 1 11
324 32.13 precipitation 0.1 270 < th dose dependent rect. 1 11
340 32.15 humidity 50.0 270 > th dose independent rect. 9 12
343 32.15 radiation 40.0 720 < th dose dependent rect. 18 11
351 32.17 radiation 1.0 270 > th dose independent sin 0 NA
353 32.17 wind 1.0 270 > th dose independent rect. 6 11
354 32.17 radiation 1.0 720 < th dose independent rect. 18 11
367 32.18 atmosphere 995.0 720 > th dose independent rect. 18 18
378 32.19 atmosphere 995.0 270 > th dose independent rect. 6 11
390 32.21 temperature 30.0 10 < th dose independent rect. 18 13
392 32.21 radiation 1.0 270 < th dose independent rect. 2 19
394 32.22 temperature 10.0 720 > th dose independent rect. 12 6
395 32.22 atmosphere 1015.0 720 < th dose independent rect. 12 6
397 32.22 temperature 10.0 720 > th dose independent rect. 18 18
407 32.24 atmosphere 1015.0 720 < th dose independent rect. 9 12
428 32.25 temperature 30.0 90 < th dose dependent rect. 17 4
439 32.29 wind 1.0 720 > th dose independent rect. 9 12
440 32.29 temperature 10.0 10 > th dose dependent rect. 7 12
442 32.30 wind 9.0 720 < th dose independent rect. 18 18
446 32.31 wind 9.0 720 < th dose independent rect. 24 6
447 32.31 temperature 10.0 720 > th dose independent rect. 24 6
448 32.31 temperature 30.0 720 < th dose independent rect. 24 6
449 32.31 humidity 50.0 720 > th dose independent rect. 24 6
452 32.31 atmosphere 995.0 720 > th dose independent rect. 24 6
453 32.31 radiation 20.0 720 < th dose independent rect. 24 6
457 32.31 temperature 10.0 720 > th dose independent rect. 6 18
501 32.40 temperature 30.0 270 < th dose independent sin 22 NA
511 32.41 radiation 1.0 270 < th dose independent rect. 15 18
515 32.41 temperature 10.0 10 > th dose dependent rect. 6 23
540 32.45 precipitation 0.1 720 < th dose independent rect. 24 6
542 32.45 precipitation 0.1 720 < th dose dependent rect. 24 6
550 32.46 radiation 40.0 720 < th dose dependent rect. 24 6
579 32.49 temperature 30.0 10 < th dose dependent rect. 14 8
581 32.50 temperature 30.0 720 < th dose independent rect. 9 6
603 32.52 temperature 10.0 10 > th dose dependent sin 19 NA
624 32.54 atmosphere 995.0 90 > th dose dependent rect. 18 13
629 32.55 temperature 30.0 720 < th dose independent rect. 9 20
636 32.56 temperature 30.0 10 < th dose dependent rect. 12 10
645 32.58 radiation 1.0 270 > th dose independent rect. 18 23
653 32.59 wind 1.0 720 > th dose independent rect. 9 5
689 32.62 humidity 50.0 270 > th dose independent rect. 1 11
702 32.64 wind 9.0 720 < th dose independent rect. 9 12
714 32.65 humidity 50.0 90 > th dose dependent rect. 17 14
752 32.69 temperature 30.0 720 < th dose independent rect. 22 10
762 32.69 temperature 30.0 1440 < th dose independent rect. 19 13
770 32.69 precipitation 0.1 720 < th dose independent rect. 6 18
776 32.69 precipitation 0.1 720 < th dose dependent rect. 6 18
781 32.71 temperature 30.0 720 < th dose independent rect. 6 3
787 32.71 radiation 1.0 720 < th dose dependent sin 12 NA
793 32.72 wind 1.0 720 > th dose independent rect. 8 14
797 32.72 temperature 10.0 10 > th dose dependent rect. 14 14
810 32.74 atmosphere 1015.0 720 < th dose independent rect. 10 10
837 32.77 precipitation 0.1 720 < th dose independent rect. 9 21
843 32.77 precipitation 0.1 720 < th dose dependent rect. 9 21
853 32.79 precipitation 0.1 720 < th dose independent rect. 21 5
855 32.79 temperature 30.0 720 < th dose independent rect. 21 12
857 32.79 precipitation 0.1 720 < th dose dependent rect. 21 5
862 32.80 temperature 10.0 720 > th dose independent rect. 21 5
863 32.80 temperature 30.0 720 < th dose independent rect. 21 5
864 32.80 humidity 50.0 720 > th dose independent rect. 21 5
867 32.80 atmosphere 995.0 720 > th dose independent rect. 21 5
868 32.80 radiation 1.0 720 < th dose independent rect. 21 5
875 32.80 temperature 10.0 720 > th dose independent rect. 2 19
876 32.80 radiation 1.0 90 < th dose independent rect. 4 19
878 32.80 radiation 1.0 720 < th dose dependent rect. 21 5
890 32.81 temperature 10.0 720 > th dose independent rect. 9 5
891 32.81 atmosphere 995.0 720 > th dose independent rect. 9 5
892 32.81 atmosphere 1015.0 720 < th dose independent rect. 9 5
902 32.81 temperature 10.0 720 > th dose independent rect. 14 19
941 32.83 radiation 1.0 90 < th dose dependent rect. 4 19
952 32.85 wind 9.0 720 < th dose independent rect. 21 5
979 32.87 temperature 10.0 90 > th dose dependent rect. 21 22
980 32.88 wind 9.0 720 < th dose independent rect. 12 6
995 32.90 wind 1.0 720 > th dose independent rect. 13 5
1000 32.90 temperature 30.0 10 < th dose dependent rect. 4 18