BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0133700 Os09g0133700|AK101816
         (347 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G30540.1  | chr1:10816951-10819172 REVERSE LENGTH=352          428   e-120

>AT1G30540.1 | chr1:10816951-10819172 REVERSE LENGTH=352
          Length = 351

 Score =  428 bits (1100), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/309 (67%), Positives = 250/309 (80%)

Query: 28  TNTVCVCLPVAMPPPESPGAVPVLSRAVAGCSNRNSVGESAALETLEQVMAQALTLVNTD 87
           T+TVCVC+P        P  +P+L RAVAGC+NRNSVGE+AA ++LEQV+++AL     D
Sbjct: 40  TSTVCVCVPFFSFGERFPDPLPILGRAVAGCTNRNSVGETAARDSLEQVISEALVQSGFD 99

Query: 88  RSAVRAVCLAVSGVNHPSDQQRMLDWIRDLFPGHVKFYVENDAVAALASGTMGKLHGCVL 147
           +S VR VCL VSGVNHPSDQ+++ +WIRD+FP HVK YV+NDA+ ALASGTMGKLHGCVL
Sbjct: 100 KSDVRGVCLGVSGVNHPSDQEKIENWIRDMFPSHVKVYVQNDAIVALASGTMGKLHGCVL 159

Query: 148 IAGTGSIAYGVTEDGKVARAAGAGPVLGDWGSGYGIAAQALTAVVKAYDGRGPHTNLTRE 207
           IAGTG IAYG  EDGK ARA+G GP+LGDWGSGYGIAAQALTAV++A+DGRGP T LT  
Sbjct: 160 IAGTGCIAYGFDEDGKEARASGGGPILGDWGSGYGIAAQALTAVIRAHDGRGPQTMLTST 219

Query: 208 ILRKLELSSPDELIGWTYADPSWARIAALVPVVVSSAEDGDEVANKILHDSVQELADSVV 267
           IL+ L LSSPDELIGWTYADPSWARIAALVP VVS AE GDE+++KIL D+ ++LA SV 
Sbjct: 220 ILKALGLSSPDELIGWTYADPSWARIAALVPQVVSCAEAGDEISDKILVDAAEDLALSVK 279

Query: 268 AVVRRLKLCGEDGMDQFPLVLVGGVLEGNKKWNISGEVVRCISKVFPGVHPIRPEVEPAI 327
           AVV+RL LCG+DG   FP+V+VGGVL  N+KW+I  EV + I++ FPG   I P+VEPA+
Sbjct: 280 AVVQRLGLCGKDGTASFPVVMVGGVLNANQKWDIGKEVSKRINRYFPGAQTIIPKVEPAV 339

Query: 328 GAALLAWNH 336
           GAALLA N 
Sbjct: 340 GAALLAMNF 348



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,398,564
Number of extensions: 296096
Number of successful extensions: 817
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 817
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 248
Effective length of database: 8,392,385
Effective search space: 2081311480
Effective search space used: 2081311480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)