BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0126600 Os09g0126600|AK064651
         (246 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0126600  Conserved hypothetical protein                      436   e-122
Os02g0771200  Conserved hypothetical protein                       90   2e-18
Os06g0498000  Conserved hypothetical protein                       74   1e-13

>Os09g0126600 Conserved hypothetical protein
          Length = 246

 Score =  436 bits (1120), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 216/227 (95%), Positives = 216/227 (95%)

Query: 20  DELPGRGGDALGAERLEGSVPAGELVKAKATKKPVAFARVWSEADELRILECLAAHVEKH 79
           DELPGRGGDALGAERLEGSVPAGELVKAKATKKPVAFARVWSEADELRILECLAAHVEKH
Sbjct: 20  DELPGRGGDALGAERLEGSVPAGELVKAKATKKPVAFARVWSEADELRILECLAAHVEKH 79

Query: 80  GAPPGRSQLPEVLAGRGLDKEEFTVSEIYEKVRRLRTQYDKMLSGPRPVPGDNRFELSCA 139
           GAPPGRSQLPEVLAGRGLDKEEFTVSEIYEKVRRLRTQYDKMLSGPRPVPGDNRFELSCA
Sbjct: 80  GAPPGRSQLPEVLAGRGLDKEEFTVSEIYEKVRRLRTQYDKMLSGPRPVPGDNRFELSCA 139

Query: 140 IWGNXXXXXXXXXXXEKSSIPASGTRGRRDLEELRPLYPYLVDEVERISTNELGGHVLKM 199
           IWGN           EKSSIPASGTRGRRDLEELRPLYPYLVDEVERISTNELGGHVLKM
Sbjct: 140 IWGNPVAPPPTSPAPEKSSIPASGTRGRRDLEELRPLYPYLVDEVERISTNELGGHVLKM 199

Query: 200 GLEFIDDGTAVRMNGMAKKQRVLELKTMLKLDSMRKEVTRTLLNNMD 246
           GLEFIDDGTAVRMNGMAKKQRVLELKTMLKLDSMRKEVTRTLLNNMD
Sbjct: 200 GLEFIDDGTAVRMNGMAKKQRVLELKTMLKLDSMRKEVTRTLLNNMD 246



>Os02g0771200 Conserved hypothetical protein
          Length = 316

 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 98/192 (51%), Gaps = 19/192 (9%)

Query: 55  AFARVWSEADELRILECLAAHVEKHGAPPGRSQLPEVLAGRGLDKEEFTVSEIYEKVRRL 114
           AF R+WS  DE+RILE LAAH  +HG+ P    L   LAG  LD   +   E+  KV  L
Sbjct: 134 AFHRIWSTEDEVRILEALAAHRREHGSLPQTDALIATLAG-SLDNTGYGRKELQGKVSTL 192

Query: 115 RTQYDKML--SGPRPVPGDNR--FELSCAIWGNXXXXXXXXXXXEKSSIPASG-TRGRRD 169
           + +Y+      G  P  G +R  ++LS ++WG+           E ++   +G T   R+
Sbjct: 193 KRRYESTAKKKGDLPSKGHDRRLYDLSKSVWGS-----------EAAAAAVNGTTTAPRE 241

Query: 170 LEELRPLYPYLVDEVERISTNELGGHVLKMGLEFIDDGTAVRMNGMAKKQRVLELKTMLK 229
             E+  LYP+L +EV+ +     G  + K     +DD  A  ++   KKQR+ E+  +L+
Sbjct: 242 FGEMCELYPHLAEEVKLLEAAHPG--LFKRDFGKLDDDKAHALDMKIKKQRIAEISVVLR 299

Query: 230 LDSMRKEVTRTL 241
              + KEVT+ L
Sbjct: 300 RGDLTKEVTKVL 311



>Os06g0498000 Conserved hypothetical protein
          Length = 216

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 90/208 (43%), Gaps = 19/208 (9%)

Query: 49  ATKKPVAFARVWSEADELRILECLAAHVEKHGAPPGRSQLPEVLAGRGLDKEEF----TV 104
           A   P AF R W+ ADE+ +LE  A+H ++HG  P    L   L GR L ++       V
Sbjct: 18  AMASPRAFQRRWAPADEISLLEAAASHRQRHGGMPSPGDLAAALRGRLLTEDHHLDARAV 77

Query: 105 SEIYEKVRRLRTQYDKMLSGPRPVPGDNR----FELSCAIWGNXXXXXXXXXXXEKSSIP 160
           S     +RR      + LS    VP  +     + LS ++W                +  
Sbjct: 78  SRQLASLRRRYAAAWRRLSSRGVVPVKDHDLRIYRLSKSLWEGSRGCGARKPIARHEA-- 135

Query: 161 ASGTRGRRDLEELRPLYPYLVDEVERISTNELGG--HVLKMGLEFIDDGTAVRMNGMAKK 218
                  R+L EL  LYP L  EVE +  + L     V +     I D  A  +   AK+
Sbjct: 136 -------RELGELEALYPCLSAEVEAVEASRLCAVPGVFRRSFRRIGDEKAAELEAKAKR 188

Query: 219 QRVLELKTMLKLDSMRKEVTRTLLNNMD 246
            R+ ELK  ++LD +RKEV  T+L  +D
Sbjct: 189 LRLAELKVGVRLDMLRKEVAETILELID 216



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,047,253
Number of extensions: 330525
Number of successful extensions: 810
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 811
Number of HSP's successfully gapped: 3
Length of query: 246
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 148
Effective length of database: 11,918,829
Effective search space: 1763986692
Effective search space used: 1763986692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)