BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0119100 Os09g0119100|AK102931
(269 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0119100 UBA-like domain containing protein 559 e-159
Os06g0642900 Ubiquitin system component Cue domain containi... 224 4e-59
Os08g0314200 Conserved hypothetical protein 206 2e-53
Os02g0184500 Conserved hypothetical protein 181 5e-46
Os08g0314400 65 5e-11
Os01g0610000 65 7e-11
>Os09g0119100 UBA-like domain containing protein
Length = 269
Score = 559 bits (1440), Expect = e-159, Method: Compositional matrix adjust.
Identities = 269/269 (100%), Positives = 269/269 (100%)
Query: 1 MSAAVCGKRASSFFEDLPHSPSSPPSKRACFRGGSSPSRPLADPALVAQIRPRFPSVGLE 60
MSAAVCGKRASSFFEDLPHSPSSPPSKRACFRGGSSPSRPLADPALVAQIRPRFPSVGLE
Sbjct: 1 MSAAVCGKRASSFFEDLPHSPSSPPSKRACFRGGSSPSRPLADPALVAQIRPRFPSVGLE 60
Query: 61 VIENALEECENDFDSAIKFLFNLHVGPTECNVDPIYQSPSGMSTELQVADEGILAGNEAA 120
VIENALEECENDFDSAIKFLFNLHVGPTECNVDPIYQSPSGMSTELQVADEGILAGNEAA
Sbjct: 61 VIENALEECENDFDSAIKFLFNLHVGPTECNVDPIYQSPSGMSTELQVADEGILAGNEAA 120
Query: 121 VPIGNAPCADNFPSSSTQWVEILVNEMTNASNMDDAKARASRVLEVFEKSMTAHVGAMGS 180
VPIGNAPCADNFPSSSTQWVEILVNEMTNASNMDDAKARASRVLEVFEKSMTAHVGAMGS
Sbjct: 121 VPIGNAPCADNFPSSSTQWVEILVNEMTNASNMDDAKARASRVLEVFEKSMTAHVGAMGS 180
Query: 181 FQKESSVYKEQFEAITRENTILKKAVAIQHERQKEHDGRNQEIQQLKQLVAQYQEQIRSL 240
FQKESSVYKEQFEAITRENTILKKAVAIQHERQKEHDGRNQEIQQLKQLVAQYQEQIRSL
Sbjct: 181 FQKESSVYKEQFEAITRENTILKKAVAIQHERQKEHDGRNQEIQQLKQLVAQYQEQIRSL 240
Query: 241 EVNNYALSMHLRQAQQANSIPGHFHRDIF 269
EVNNYALSMHLRQAQQANSIPGHFHRDIF
Sbjct: 241 EVNNYALSMHLRQAQQANSIPGHFHRDIF 269
>Os06g0642900 Ubiquitin system component Cue domain containing protein
Length = 275
Score = 224 bits (571), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 133/283 (46%), Positives = 177/283 (62%), Gaps = 22/283 (7%)
Query: 1 MSAAVCGKRASSFFED-------LPHSPSSPPSKRACFRGGSSPSRPLADPALVAQIRPR 53
MSA VCGKR+S+ F D P+KR+C SP R A + +
Sbjct: 1 MSAVVCGKRSSAIFADDLLPPSPPSPHSHHHPAKRSC----RSPHRR--REAHLHHLSSL 54
Query: 54 FPSVGLEVIENALEECENDFDSAIKFLFNLHVGPTECNVDPI-YQSPSGMSTELQVADEG 112
FP + +++E AL+ +D DSAIK L NL + TE + +S +G+ T + + EG
Sbjct: 55 FPGMDPQLLEGALDASGDDLDSAIKSLNNLRLESTEAILSATGCKSENGLPTAVYPSVEG 114
Query: 113 ILAGNEAAVPIGNA--PCADNFPSSS--TQWVEILVNEMTNASNMDDAKARASRVLEVFE 168
I+ N V N AD+ + + ++WVE+ V EMTNAS+M DA+ARASR LEV E
Sbjct: 115 IV--NNGGVSTANEHPAAADSCQTGNNGSEWVELFVREMTNASDMGDARARASRALEVLE 172
Query: 169 KSMTAHVGAMGS--FQKESSVYKEQFEAITRENTILKKAVAIQHERQKEHDGRNQEIQQL 226
KS+ GA + QKE+ + KEQ + REN +LK+AVAIQHERQKE D R+QE+Q L
Sbjct: 173 KSIVERTGADAAQNLQKENMMLKEQLTVVLRENAVLKRAVAIQHERQKEFDERSQEVQSL 232
Query: 227 KQLVAQYQEQIRSLEVNNYALSMHLRQAQQANSIPGHFHRDIF 269
KQLV QYQEQ+R+LE+NNYAL+MHL+QAQQ NSIPGHF+ D+F
Sbjct: 233 KQLVVQYQEQLRTLEINNYALTMHLKQAQQNNSIPGHFNPDVF 275
>Os08g0314200 Conserved hypothetical protein
Length = 218
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 99/163 (60%), Positives = 132/163 (80%), Gaps = 4/163 (2%)
Query: 110 DEGILA-GNEAAVPIGNAPCADNFPSSSTQWVEILVNEMTNASNMDDAKARASRVLEVFE 168
+ G+++ GNE P +APC +NFPS+ ++WVE+LVNEMT ASNMDDAK+RA+RVLE FE
Sbjct: 57 ESGVVSDGNEIGAPSESAPCPENFPSNGSEWVELLVNEMTTASNMDDAKSRATRVLEAFE 116
Query: 169 KSMTAHVGAMG--SFQKESSVYKEQFEAITRENTILKKAVAIQHERQKEHDGRNQEIQQL 226
K++ +HV A G FQKE++V K Q E++TRENTILK+A AIQHERQ ++D +NQE+Q
Sbjct: 117 KAVVSHVNAQGPHDFQKENAVLKGQMESLTRENTILKRAFAIQHERQ-DYDAKNQELQDE 175
Query: 227 KQLVAQYQEQIRSLEVNNYALSMHLRQAQQANSIPGHFHRDIF 269
KQ +A++QEQ+R+LE+NNY LSM LRQAQQ +SIPG F+ D+F
Sbjct: 176 KQRIAEFQEQVRNLELNNYRLSMLLRQAQQGSSIPGRFNPDVF 218
>Os02g0184500 Conserved hypothetical protein
Length = 212
Score = 181 bits (459), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 100/214 (46%), Positives = 137/214 (64%), Gaps = 9/214 (4%)
Query: 60 EVIENALEECENDFDSAIKFLFNLHVGPTECNVDPIYQSPSGMSTELQVADEGILAGNEA 119
+++E ALE +D DSAIK L L + + S S + L+++ EG++
Sbjct: 4 QLLERALEASGDDIDSAIKSLNELCLESA-----AVGDSNSVLPAALKLSAEGVVNNGHL 58
Query: 120 AVPIGNAPCADNFPSS--STQWVEILVNEMTNASNMDDAKARASRVLEVFEKSMTAHVG- 176
V N +NF ++ ++WVE+ V EM +AS++DDA+ARASR LE EKS+ G
Sbjct: 59 DVLTENPHATENFQTNHHGSEWVELFVREMMSASDIDDARARASRALEALEKSIMERAGT 118
Query: 177 -AMGSFQKESSVYKEQFEAITRENTILKKAVAIQHERQKEHDGRNQEIQQLKQLVAQYQE 235
A+ + KE+ + KEQ REN +LK+AVAIQHERQKE D R QE+ LKQLV QYQE
Sbjct: 119 EAVHNLHKENVMLKEQLAIYLRENAVLKRAVAIQHERQKEFDERTQEVHSLKQLVLQYQE 178
Query: 236 QIRSLEVNNYALSMHLRQAQQANSIPGHFHRDIF 269
QI++LE+NNYAL +HL+QAQQ NS+PG F D+F
Sbjct: 179 QIKTLEINNYALRVHLKQAQQNNSMPGRFPPDVF 212
>Os08g0314400
Length = 406
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 33/150 (22%)
Query: 1 MSAAVCGKRASS-FFEDLPH-SPSSPPSKRACFRGGS--------SPSRPLADPALVAQI 50
MSA VCGKRASS FFEDL H + SPP+ + GG+ + R + LVA++
Sbjct: 247 MSAVVCGKRASSSFFEDLTHPTGGSPPAAKRTRCGGAFFPPPPPPTWPRGVTKNDLVARL 306
Query: 51 RPRFPSVGLE----------------------VIENALEECENDFDSAIKFLFNLHVGPT 88
+FP++ LE +IE AL++ N+ DSAI+ L NLH+
Sbjct: 307 STQFPAMSLEENLVVGEDFGFGVTMTLNDLTQMIEKALDKSGNNVDSAIRSLLNLHLESV 366
Query: 89 ECNVDPIYQSPSGMSTELQVADEGILAGNE 118
+ N ++ P +TE+QV+ E G+E
Sbjct: 367 QNNSGVAFE-PIQETTEVQVSAEEAAEGHE 395
>Os01g0610000
Length = 200
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 16/116 (13%)
Query: 139 WVEILVNEMTNASNMDDAKARASRVLEVFEKSMTAHVGAMGSFQKESSVYKEQFEAITRE 198
WVE ++ E+ A++MDDA+ R +RVL+ + + +A +R+
Sbjct: 79 WVETMMRELWAAASMDDARERGARVLDA-------------FGAAVGAGTAARLDAASRQ 125
Query: 199 NTILKKAVAIQHERQKEHDGRNQEIQQLKQLVAQYQEQIRSLEVNNYALSMHLRQA 254
LK+AV H + + +E L+ + Y+EQ+R LE +NYALS+HLRQA
Sbjct: 126 IGFLKRAVLFHHRLRTAQEKAQRE---LRWQLDDYREQVRRLEASNYALSLHLRQA 178
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.129 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,034,081
Number of extensions: 372580
Number of successful extensions: 1601
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1591
Number of HSP's successfully gapped: 6
Length of query: 269
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 170
Effective length of database: 11,866,615
Effective search space: 2017324550
Effective search space used: 2017324550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)