Os09g0119100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UBA-like domain containing protein.
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Os09g0119100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : UBA-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.4 | 0.165 | 13.2 | 1.16 | 0.184 | -0.615 | -0.113 | 0.301 | 0.564 | 23.2 | 25.7 | 23 | -- | -- |
| 12.43 | 0.164 | 13.2 | 1.13 | 0.189 | -0.596 | -0.135 | -- | 0.558 | 23.2 | 25.7 | 23 | -- | -- |
| 12.45 | 0.164 | 13.2 | 1.17 | 0.187 | -0.61 | -- | 0.362 | 0.566 | 23.3 | 25.7 | 24 | -- | -- |
| 12.5 | 0.165 | 13.2 | 1.13 | 0.192 | -0.579 | -- | -- | 0.555 | 23.4 | 25.7 | 24 | -- | -- |
| 14.1 | 0.176 | 13.2 | 1.21 | -- | -0.694 | -- | 0.454 | 0.62 | -- | 24.2 | 19 | -- | -- |
| 17.36 | 0.195 | 13.2 | 1.05 | 0.355 | -- | 0.0721 | -- | 0.526 | 1.37 | -- | -- | -- | -- |
| 17.38 | 0.195 | 13.2 | 1.04 | 0.355 | -- | -- | -- | 0.526 | 1.33 | -- | -- | -- | -- |
| 14.19 | 0.175 | 13.2 | 1.16 | -- | -0.665 | -- | -- | 0.606 | -- | 24.1 | 8 | -- | -- |
| 44.65 | 0.311 | 13.3 | -- | 0.308 | -0.318 | -- | -- | 0.404 | 0.779 | 27.68 | 98 | -- | -- |
| 25.13 | 0.234 | 13.2 | 1.06 | -- | -- | -- | -- | 0.533 | -- | -- | -- | -- | -- |
| 46.09 | 0.318 | 13.3 | -- | 0.373 | -- | -- | -- | 0.41 | 1.43 | -- | -- | -- | -- |
| 48.31 | 0.325 | 13.3 | -- | -- | -0.516 | -- | -- | 0.447 | -- | 24.9 | 7 | -- | -- |
| 54.63 | 0.345 | 13.3 | -- | -- | -- | -- | -- | 0.416 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.69 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 13 |
| 9 | 11.90 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 31 | 12.14 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 40 | 12.20 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 41 | 12.20 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 82 | 12.35 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 88 | 12.36 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 21 |
| 94 | 12.38 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 19 |
| 96 | 12.38 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 99 | 12.39 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 10 |
| 107 | 12.39 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 108 | 12.39 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 139 | 12.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 179 | 12.47 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 335 | 12.56 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 404 | 12.64 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 470 | 12.70 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 651 | 12.89 | temperature | 25 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 719 | 12.97 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 3 |
| 787 | 13.00 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |