BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0119100 Os09g0119100|AK102931
(269 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G32440.3 | chr5:12077014-12078396 FORWARD LENGTH=266 186 1e-47
AT1G80040.3 | chr1:30109447-30111051 REVERSE LENGTH=260 163 1e-40
AT5G02510.1 | chr5:560135-560860 FORWARD LENGTH=180 95 3e-20
>AT5G32440.3 | chr5:12077014-12078396 FORWARD LENGTH=266
Length = 265
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 124/278 (44%), Positives = 167/278 (60%), Gaps = 22/278 (7%)
Query: 1 MSAAVCGKRASSFFEDLPHSPSSPP--SKRACFRGGSSPSRPLADPA----LVAQIRPRF 54
MSA VCGKR S FEDL + +SPP K CF SS P L+ + F
Sbjct: 1 MSAIVCGKR--SLFEDL--AAASPPVSKKLRCFSSSSSSRFSPPIPPSSSLLLDHLAAIF 56
Query: 55 PSVGLEVIENALEECENDFDSAIKFLFNLHVGPTECNVD-PIYQSPSGMSTELQVADEGI 113
P + +++E A+EEC +D DSAI+ L L + N D QSP V E
Sbjct: 57 PDMDKQILERAIEECGDDLDSAIRCLNQLRLESANKNSDSATNQSPV-------VIQEPN 109
Query: 114 LAGNEAAVPIGNAPCADNFPSSSTQWVEILVNEMTNASNMDDAKARASRVLEVFEKSMTA 173
+ + P N T+WVE+ V EM NAS+M DAKARA+R LE EKS+ A
Sbjct: 110 VEPQQQGRSAKEEPNVLNL--DGTEWVELFVREMMNASDMKDAKARAARALEALEKSINA 167
Query: 174 HVG--AMGSFQKESSVYKEQFEAITRENTILKKAVAIQHERQKEHDGRNQEIQQLKQLVA 231
G AM + Q+E+ + K+Q EAI +EN++LK+AV Q +RQ+E + ++QE+Q L+QLV
Sbjct: 168 RTGTDAMQNLQQENMMLKQQLEAIVQENSLLKRAVVTQQKRQRESEDQSQELQHLRQLVT 227
Query: 232 QYQEQIRSLEVNNYALSMHLRQAQQANSIPGHFHRDIF 269
QYQEQ+R+LEVNNYAL++HL+QAQQ +SIPG +H D+F
Sbjct: 228 QYQEQLRTLEVNNYALTLHLKQAQQNSSIPGRYHPDVF 265
>AT1G80040.3 | chr1:30109447-30111051 REVERSE LENGTH=260
Length = 259
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/284 (36%), Positives = 152/284 (53%), Gaps = 40/284 (14%)
Query: 1 MSAAVCGKRASSFFEDLPHSPSSPPSKRA--CFRGGSSPSRPLADPALVAQIRPRFPSVG 58
MSA CG + S+F+D SSPPS + CF +SP + + Q+ FP +
Sbjct: 1 MSAVYCGTK-RSYFDD----NSSPPSSKRFRCFSPSNSPIWSSPPSSSLDQLHSAFPHIE 55
Query: 59 L-----------EVIENALEECENDFDSAIKFLFNLHVGPTECNVDPIYQSPSGMSTELQ 107
L +V+ ALE+ +DF++A+K L++ + + + T
Sbjct: 56 LTVASKIHVSVAQVLVKALEDNGSDFNAAMKSLYSFASSEEKKAEELAAGGAATQET--- 112
Query: 108 VADEGILAGNEAAVPIGNAPCADNFPSSSTQWVEILVNEMTNASNMDDAKARASRVLEVF 167
+A C N P+S WVE+LV E+ +S DDAK RA+RVLE
Sbjct: 113 -----------------DAVCGGNPPTSGDDWVELLVREVLQSSGTDDAKVRAARVLEAL 155
Query: 168 EKSMTAHVG--AMGSFQKESSVYKEQFEAITRENTILKKAVAIQHERQKEHDGRNQEIQQ 225
EK ++A A FQ+E ++Q E + ++NT+LK+AVAIQHERQK + N ++
Sbjct: 156 EKMLSARAREEAGNKFQEEKVAVQQQVETLVKDNTVLKRAVAIQHERQKALEDANHQLGL 215
Query: 226 LKQLVAQYQEQIRSLEVNNYALSMHLRQAQQANSIPGHFHRDIF 269
LKQLV QYQE++R+LEVNNYAL M L+Q + NS+P F+ D+F
Sbjct: 216 LKQLVPQYQEKLRNLEVNNYALRMQLQQVEHGNSMPARFNPDVF 259
>AT5G02510.1 | chr5:560135-560860 FORWARD LENGTH=180
Length = 179
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 83/133 (62%), Gaps = 3/133 (2%)
Query: 138 QWVEILVNEMTNASNMDDAKARASRVLEVFEKSMTAHVGAMGSFQKESSVYKEQFEAITR 197
+WV+ LV+EMT A N+DD + R + +LE E + + A S + E + KE +++
Sbjct: 49 KWVDRLVSEMTKAINIDDMRRRVAVILEALESIIKKNTNA--SKKLEYASMKESLQSLIN 106
Query: 198 ENTILKKAVAIQHERQKEHDGRNQEIQQLKQLVAQYQEQIRSLEVNNYALSMHL-RQAQQ 256
+N ILK+ +A QH+R E++ + +++ L+ +V QYQEQ+ LE++NYA+ +HL R QQ
Sbjct: 107 DNQILKRVIANQHQRSSENEEKAKQVLHLRGVVGQYQEQVHKLELSNYAMKLHLQRSQQQ 166
Query: 257 ANSIPGHFHRDIF 269
S G+ DI+
Sbjct: 167 QTSFSGNLPPDIY 179
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.129 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,686,547
Number of extensions: 228695
Number of successful extensions: 924
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 919
Number of HSP's successfully gapped: 3
Length of query: 269
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 172
Effective length of database: 8,447,217
Effective search space: 1452921324
Effective search space used: 1452921324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)