Os02g0184500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0184500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.21 | 0.171 | 13 | 0.125 | 0.813 | -0.513 | -0.264 | 0.247 | 0.0523 | 0.522 | 49 | 4478 | -- | -- |
| 13.19 | 0.169 | 13 | 0.119 | 0.807 | -0.53 | -0.267 | -- | 0.0547 | 0.556 | 49 | 4592 | -- | -- |
| 13.47 | 0.171 | 13 | 0.123 | 0.816 | -0.566 | -- | 0.196 | 0.0495 | 0.558 | 50 | 4562 | -- | -- |
| 13.47 | 0.171 | 13 | 0.124 | 0.812 | -0.565 | -- | -- | 0.0589 | 0.506 | 49.54 | 4731 | -- | -- |
| 54.41 | 0.344 | 13 | 0.116 | -- | -0.443 | -- | -0.125 | 0.0826 | -- | 48 | 4681 | -- | -- |
| 15.66 | 0.186 | 13 | -0.0303 | 0.798 | -- | -0.31 | -- | 0.0923 | 0.514 | -- | -- | -- | -- |
| 16.08 | 0.188 | 13 | -0.0185 | 0.799 | -- | -- | -- | 0.0938 | 0.527 | -- | -- | -- | -- |
| 51.85 | 0.337 | 12.9 | 0.00778 | -- | -0.494 | -- | -- | 0.0808 | -- | 52 | 7414 | -- | -- |
| 13.8 | 0.173 | 13 | -- | 0.811 | -0.488 | -- | -- | 0.0513 | 0.522 | 49.87 | 4731 | -- | -- |
| 56.09 | 0.35 | 12.9 | 0.00924 | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
| 16.08 | 0.188 | 13 | -- | 0.798 | -- | -- | -- | 0.0959 | 0.526 | -- | -- | -- | -- |
| 50.87 | 0.333 | 13 | -- | -- | -0.493 | -- | -- | 0.0721 | -- | 55 | 7426 | -- | -- |
| 56.09 | 0.35 | 12.9 | -- | -- | -- | -- | -- | 0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.08 | humidity | 50 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 37 | 13.14 | humidity | 50 | 4320 | < th | dose independent | sin | 14 | NA |
| 39 | 13.16 | humidity | 50 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 43 | 13.17 | humidity | 50 | 4320 | < th | dose dependent | sin | 12 | NA |
| 64 | 13.21 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 5 |
| 77 | 13.21 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 19 |
| 98 | 13.23 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 99 | 13.24 | humidity | 50 | 4320 | > th | dose independent | sin | 15 | NA |
| 108 | 13.25 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 133 | 13.29 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 178 | 13.34 | humidity | 90 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 184 | 13.35 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 189 | 13.37 | humidity | 50 | 4320 | < th | dose dependent | rect. | 14 | 4 |
| 208 | 13.38 | humidity | 50 | 4320 | < th | dose independent | no | NA | NA |
| 364 | 13.39 | humidity | 50 | 4320 | < th | dose independent | rect. | 15 | 23 |
| 367 | 13.39 | radiation | 30 | 90 | < th | dose dependent | rect. | 6 | 9 |
| 390 | 13.42 | humidity | 50 | 4320 | > th | dose independent | rect. | 6 | 15 |
| 391 | 13.42 | humidity | 50 | 4320 | > th | dose independent | rect. | 6 | 17 |
| 398 | 13.43 | humidity | 50 | 4320 | > th | dose independent | rect. | 6 | 11 |
| 439 | 13.43 | humidity | 50 | 4320 | > th | dose independent | rect. | 24 | 21 |
| 451 | 13.43 | humidity | 50 | 4320 | > th | dose independent | rect. | 19 | 23 |
| 455 | 13.44 | humidity | 50 | 4320 | > th | dose independent | no | NA | NA |
| 456 | 13.44 | humidity | 50 | 4320 | > th | dose independent | rect. | 8 | 9 |
| 488 | 13.44 | humidity | 50 | 4320 | > th | dose independent | rect. | 22 | 19 |
| 502 | 13.44 | humidity | 50 | 4320 | > th | dose independent | rect. | 20 | 21 |
| 525 | 13.45 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 536 | 13.46 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 23 |
| 538 | 13.47 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 545 | 13.48 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 2 |
| 550 | 13.48 | humidity | 50 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 606 | 13.58 | radiation | 30 | 90 | < th | dose independent | rect. | 5 | 10 |
| 673 | 13.66 | wind | 1 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 682 | 13.67 | radiation | 30 | 90 | < th | dose dependent | rect. | 5 | 19 |
| 684 | 13.68 | radiation | 30 | 270 | < th | dose independent | rect. | 3 | 11 |
| 691 | 13.69 | humidity | 50 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 692 | 13.69 | radiation | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 699 | 13.70 | radiation | 10 | 4320 | < th | dose dependent | rect. | 13 | 1 |
| 703 | 13.70 | humidity | 50 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 768 | 13.76 | radiation | 20 | 90 | < th | dose independent | rect. | 5 | 19 |
| 836 | 13.79 | humidity | 50 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 844 | 13.80 | humidity | 80 | 10 | > th | dose independent | rect. | 6 | 10 |
| 858 | 13.81 | humidity | 80 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 909 | 13.82 | radiation | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 923 | 13.83 | radiation | 30 | 90 | < th | dose dependent | rect. | 18 | 23 |
| 927 | 13.84 | radiation | 20 | 90 | < th | dose dependent | sin | 23 | NA |
| 929 | 13.84 | humidity | 60 | 4320 | < th | dose dependent | rect. | 11 | 8 |