BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0184500 Os02g0184500|AK105238
(212 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0184500 Conserved hypothetical protein 400 e-112
Os06g0642900 Ubiquitin system component Cue domain containi... 274 4e-74
Os09g0119100 UBA-like domain containing protein 154 3e-38
Os08g0314200 Conserved hypothetical protein 142 2e-34
>Os02g0184500 Conserved hypothetical protein
Length = 212
Score = 400 bits (1028), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/212 (92%), Positives = 197/212 (92%)
Query: 1 MDPQLLERALEASGDDIDSAIKSLNELCLESAAVGDSNSVLPAALKLSAEGVVNNGHLDV 60
MDPQLLERALEASGDDIDSAIKSLNELCLESAAVGDSNSVLPAALKLSAEGVVNNGHLDV
Sbjct: 1 MDPQLLERALEASGDDIDSAIKSLNELCLESAAVGDSNSVLPAALKLSAEGVVNNGHLDV 60
Query: 61 LTENPHATENFQTNHHGSEWVELFVREMMXXXXXXXXXXXXXXXLEALEKSIMERAGTEA 120
LTENPHATENFQTNHHGSEWVELFVREMM LEALEKSIMERAGTEA
Sbjct: 61 LTENPHATENFQTNHHGSEWVELFVREMMSASDIDDARARASRALEALEKSIMERAGTEA 120
Query: 121 VHNLHKENVMLKEQLAIYLRENAVLKRAVAIQHERQKEFDERTQEVHSLKQLVLQYQEQI 180
VHNLHKENVMLKEQLAIYLRENAVLKRAVAIQHERQKEFDERTQEVHSLKQLVLQYQEQI
Sbjct: 121 VHNLHKENVMLKEQLAIYLRENAVLKRAVAIQHERQKEFDERTQEVHSLKQLVLQYQEQI 180
Query: 181 KTLEINNYALRVHLKQAQQNNSMPGRFPPDVF 212
KTLEINNYALRVHLKQAQQNNSMPGRFPPDVF
Sbjct: 181 KTLEINNYALRVHLKQAQQNNSMPGRFPPDVF 212
>Os06g0642900 Ubiquitin system component Cue domain containing protein
Length = 275
Score = 274 bits (700), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 142/218 (65%), Positives = 164/218 (75%), Gaps = 6/218 (2%)
Query: 1 MDPQLLERALEASGDDIDSAIKSLNELCLES-----AAVG-DSNSVLPAALKLSAEGVVN 54
MDPQLLE AL+ASGDD+DSAIKSLN L LES +A G S + LP A+ S EG+VN
Sbjct: 58 MDPQLLEGALDASGDDLDSAIKSLNNLRLESTEAILSATGCKSENGLPTAVYPSVEGIVN 117
Query: 55 NGHLDVLTENPHATENFQTNHHGSEWVELFVREMMXXXXXXXXXXXXXXXLEALEKSIME 114
NG + E+P A ++ QT ++GSEWVELFVREM LE LEKSI+E
Sbjct: 118 NGGVSTANEHPAAADSCQTGNNGSEWVELFVREMTNASDMGDARARASRALEVLEKSIVE 177
Query: 115 RAGTEAVHNLHKENVMLKEQLAIYLRENAVLKRAVAIQHERQKEFDERTQEVHSLKQLVL 174
R G +A NL KEN+MLKEQL + LRENAVLKRAVAIQHERQKEFDER+QEV SLKQLV+
Sbjct: 178 RTGADAAQNLQKENMMLKEQLTVVLRENAVLKRAVAIQHERQKEFDERSQEVQSLKQLVV 237
Query: 175 QYQEQIKTLEINNYALRVHLKQAQQNNSMPGRFPPDVF 212
QYQEQ++TLEINNYAL +HLKQAQQNNS+PG F PDVF
Sbjct: 238 QYQEQLRTLEINNYALTMHLKQAQQNNSIPGHFNPDVF 275
>Os09g0119100 UBA-like domain containing protein
Length = 269
Score = 154 bits (390), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 123/214 (57%), Gaps = 9/214 (4%)
Query: 4 QLLERALEASGDDIDSAIKSLNELCLESA-----AVGDSNSVLPAALKLSAEGVVNNGHL 58
+++E ALE +D DSAIK L L + + S S + L+++ EG++
Sbjct: 60 EVIENALEECENDFDSAIKFLFNLHVGPTECNVDPIYQSPSGMSTELQVADEGILAGNEA 119
Query: 59 DVLTENPHATENFQTNHHGSEWVELFVREMMXXXXXXXXXXXXXXXLEALEKSIMERAGT 118
V N +NF ++ ++WVE+ V EM LE EKS+ G
Sbjct: 120 AVPIGNAPCADNFPSS--STQWVEILVNEMTNASNMDDAKARASRVLEVFEKSMTAHVG- 176
Query: 119 EAVHNLHKENVMLKEQLAIYLRENAVLKRAVAIQHERQKEFDERTQEVHSLKQLVLQYQE 178
A+ + KE+ + KEQ REN +LK+AVAIQHERQKE D R QE+ LKQLV QYQE
Sbjct: 177 -AMGSFQKESSVYKEQFEAITRENTILKKAVAIQHERQKEHDGRNQEIQQLKQLVAQYQE 235
Query: 179 QIKTLEINNYALRVHLKQAQQNNSMPGRFPPDVF 212
QI++LE+NNYAL +HL+QAQQ NS+PG F D+F
Sbjct: 236 QIRSLEVNNYALSMHLRQAQQANSIPGHFHRDIF 269
>Os08g0314200 Conserved hypothetical protein
Length = 218
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 108/183 (59%), Gaps = 4/183 (2%)
Query: 31 SAAVGDSNSVLPAALKLSAEGVVNNGH-LDVLTENPHATENFQTNHHGSEWVELFVREMM 89
SAA N ++ GVV++G+ + +E+ ENF +N GSEWVEL V EM
Sbjct: 39 SAAGYGVNGRRGGSMSRRESGVVSDGNEIGAPSESAPCPENFPSN--GSEWVELLVNEMT 96
Query: 90 XXXXXXXXXXXXXXXLEALEKSIMERAGTEAVHNLHKENVMLKEQLAIYLRENAVLKRAV 149
LEA EK+++ + H+ KEN +LK Q+ REN +LKRA
Sbjct: 97 TASNMDDAKSRATRVLEAFEKAVVSHVNAQGPHDFQKENAVLKGQMESLTRENTILKRAF 156
Query: 150 AIQHERQKEFDERTQEVHSLKQLVLQYQEQIKTLEINNYALRVHLKQAQQNNSMPGRFPP 209
AIQHERQ ++D + QE+ KQ + ++QEQ++ LE+NNY L + L+QAQQ +S+PGRF P
Sbjct: 157 AIQHERQ-DYDAKNQELQDEKQRIAEFQEQVRNLELNNYRLSMLLRQAQQGSSIPGRFNP 215
Query: 210 DVF 212
DVF
Sbjct: 216 DVF 218
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.129 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,917,081
Number of extensions: 186453
Number of successful extensions: 503
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 498
Number of HSP's successfully gapped: 4
Length of query: 212
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 115
Effective length of database: 11,971,043
Effective search space: 1376669945
Effective search space used: 1376669945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 154 (63.9 bits)