BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0103800 Os09g0103800|Os09g0103800
(531 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0103800 Peptidylprolyl isomerase, FKBP-type domain con... 1060 0.0
Os09g0104100 121 1e-27
Os09g0293900 Peptidylprolyl isomerase, FKBP-type domain con... 98 1e-20
Os04g0446500 Similar to FK506-binding protein 2 precursor (... 86 7e-17
>Os09g0103800 Peptidylprolyl isomerase, FKBP-type domain containing protein
Length = 531
Score = 1060 bits (2741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/531 (96%), Positives = 513/531 (96%)
Query: 1 MATFWGLELKPGEAYTHHSAPARLRITQAVLGSCDQGWTTLQCDTNDRETVRLCVLNPGL 60
MATFWGLELKPGEAYTHHSAPARLRITQAVLGSCDQGWTTLQCDTNDRETVRLCVLNPGL
Sbjct: 1 MATFWGLELKPGEAYTHHSAPARLRITQAVLGSCDQGWTTLQCDTNDRETVRLCVLNPGL 60
Query: 61 AVACHLELELQKDENVLLSVDGQNSIHLSGYYTCSHSGNHGRNSQKPTSKAVGSTGFNKK 120
AVACHLELELQKDENVLLSVDGQNSIHLSGYYTCSHSGNHGRNSQKPTSKAVGSTGFNKK
Sbjct: 61 AVACHLELELQKDENVLLSVDGQNSIHLSGYYTCSHSGNHGRNSQKPTSKAVGSTGFNKK 120
Query: 121 HQDISDKAPVIEEILDDQTVXXXXXXGVNISSKDVEPSHKNGHGQNSEWATCXXXXXXXX 180
HQDISDKAPVIEEILDDQTV GVNISSKDVEPSHKNGHGQNSEWATC
Sbjct: 121 HQDISDKAPVIEEILDDQTVQQQQQQGVNISSKDVEPSHKNGHGQNSEWATCGNGTDDDN 180
Query: 181 XXXXAMFYPSSRNKMEVDEPTGSKDNDYDYWLPFLDASVKRKASETDGENVYTEKGELKT 240
AMFYPSSRNKMEVDEPTGSKDNDYDYWLPFLDASVKRKASETDGENVYTEKGELKT
Sbjct: 181 DNNGAMFYPSSRNKMEVDEPTGSKDNDYDYWLPFLDASVKRKASETDGENVYTEKGELKT 240
Query: 241 PKIENVLSDQSVDMDQVNEQTCSKNVEPNEIDDVKPTRGHKNTMEVVLPLLDSSVKRKAA 300
PKIENVLSDQSVDMDQVNEQTCSKNVEPNEIDDVKPTRGHKNTMEVVLPLLDSSVKRKAA
Sbjct: 241 PKIENVLSDQSVDMDQVNEQTCSKNVEPNEIDDVKPTRGHKNTMEVVLPLLDSSVKRKAA 300
Query: 301 EIDGEKVQIEKAKLKMPKTEDVPSDQNNANQVNEQICFKTVGSNAIDDAKLSLGHQNTLE 360
EIDGEKVQIEKAKLKMPKTEDVPSDQNNANQVNEQICFKTVGSNAIDDAKLSLGHQNTLE
Sbjct: 301 EIDGEKVQIEKAKLKMPKTEDVPSDQNNANQVNEQICFKTVGSNAIDDAKLSLGHQNTLE 360
Query: 361 DLDKSQELNVSQTKGQNDVADQITNQDTPTITSSDERYIFTGALETDIEQKNRGAENEQV 420
DLDKSQELNVSQTKGQNDVADQITNQDTPTITSSDERYIFTGALETDIEQKNRGAENEQV
Sbjct: 361 DLDKSQELNVSQTKGQNDVADQITNQDTPTITSSDERYIFTGALETDIEQKNRGAENEQV 420
Query: 421 EVHRCPFEVLDNGIKVEHLVEGNAKAKVASKGKQVCVRYCGRLINGEVIDPTNLDDDTHT 480
EVHRCPFEVLDNGIKVEHLVEGNAKAKVASKGKQVCVRYCGRLINGEVIDPTNLDDDTHT
Sbjct: 421 EVHRCPFEVLDNGIKVEHLVEGNAKAKVASKGKQVCVRYCGRLINGEVIDPTNLDDDTHT 480
Query: 481 FRLGMRVGGKRRLTIPPAQGYGDVATPKIPANSWLVYEVELLEVKRAKRAR 531
FRLGMRVGGKRRLTIPPAQGYGDVATPKIPANSWLVYEVELLEVKRAKRAR
Sbjct: 481 FRLGMRVGGKRRLTIPPAQGYGDVATPKIPANSWLVYEVELLEVKRAKRAR 531
>Os09g0104100
Length = 416
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 113/218 (51%), Gaps = 37/218 (16%)
Query: 333 NEQICFKTVGSNAID-DAKLSLGHQ---NTLEDLDKSQELNVSQTKGQNDVADQITNQDT 388
N + K + SNA+D DA L L H N ++ SQE N SQT ND AD I Q
Sbjct: 201 NSKQATKEMESNAMDEDASLGLEHTLGGNVVQA--ASQEENASQTHEDNDAADHIIQQTD 258
Query: 389 PTITSSDERYIFTGALETDIEQKNRGAENEQVEVHRCPFEVLDNGIKVEHLVEGNAKAKV 448
P I S E +N++ E+ VLD+G+ +E L +GN AK+
Sbjct: 259 PPILVS--------------EDDGTAEDNDEAELQP-RIRVLDSGMTIEDLAKGNVGAKI 303
Query: 449 ASKGKQVCVRYCGRLINGEVIDPTNLDDDTHTFRLG--------------MRVGGKRRLT 494
AS GK+V V+Y L NG+ +DPT + T F+LG MRVGG RRL
Sbjct: 304 ASCGKKVYVKYVCMLSNGDTVDPTG-ESSTCKFKLGAGEVISGWDLGIDGMRVGGIRRLG 362
Query: 495 IPPAQGYGDVATPKIPANSWLVYEVELLEVKRA-KRAR 531
IPP GYGDV IP N+WL +++ELL+VK K+AR
Sbjct: 363 IPPHLGYGDVGRGNIPPNAWLNFDIELLKVKSGRKKAR 400
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Query: 29 AVLGSCDQ-GWTTLQCDTNDRETVRLCVLNPGLAVACHLELELQKDENVLLSVDGQNSIH 87
A LG+ D GW ++C D+ V++ LNP A LELE ++++NV+LSV GQNS+H
Sbjct: 42 ATLGNFDHSGWVLVECKVGDQGLVKVAALNPETAPVAPLELEFEENKNVVLSVRGQNSVH 101
Query: 88 LSGYYTCSHSGNHGRNSQKPT 108
LSGYY CS++G++G NS++ T
Sbjct: 102 LSGYYICSYNGDYGENSKQAT 122
>Os09g0293900 Peptidylprolyl isomerase, FKBP-type domain containing protein
Length = 416
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 110/188 (58%), Gaps = 18/188 (9%)
Query: 351 LSLGHQNTLEDLDKSQ----ELNVSQTKGQNDV----ADQITNQDTPT--ITSSDERYIF 400
+SL + +D+D+++ ELN TK N D I+ P +T++DE +
Sbjct: 221 VSLAKKENTKDVDETKYPNSELNDDTTKKSNGAKKRKGDAISQDHAPLMDLTNADEPLV- 279
Query: 401 TGALETDIEQKNRGAENEQVEV----HRCPFEVLDNGIKVEHLVEGNAKAKVASKGKQVC 456
+ E ++K++ +Q+EV H L++G+ VE L GN A++AS G +V
Sbjct: 280 --SKEGRTKKKSKKKGGKQLEVGDGKHSNKIRTLEDGLIVEDLSTGNLDAEMASNGSKVS 337
Query: 457 VRYCGRLINGEVIDPTNLDDDTHTFRLGMRVGGKRRLTIPPAQGYGDVATPKIPANSWLV 516
++Y G L +G++++ +N+ + + F+LGMRVG KR+LT+PPA YG A ++P NS ++
Sbjct: 338 IKYVGTLQDGKIVE-SNVGEKPYKFKLGMRVGDKRKLTVPPAMCYGSKAIGEVPKNSSII 396
Query: 517 YEVELLEV 524
YE+EL+++
Sbjct: 397 YEIELVKI 404
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/92 (55%), Positives = 65/92 (70%), Gaps = 3/92 (3%)
Query: 4 FWGLELKPGEAYTHHSAPA--RLRITQAVLGSCDQGWTTL-QCDTNDRETVRLCVLNPGL 60
FWG+E+K G+ YTH P+ RLRI QA LGSCD T+ QC+ + + LC LNP L
Sbjct: 3 FWGVEVKAGKPYTHRHDPSHGRLRICQATLGSCDSATRTIVQCNVGSKTPIILCSLNPKL 62
Query: 61 AVACHLELELQKDENVLLSVDGQNSIHLSGYY 92
A CHLE+EL++D+ V+ SV GQ+SIHLSGYY
Sbjct: 63 AEMCHLEVELEEDDEVVFSVLGQSSIHLSGYY 94
>Os04g0446500 Similar to FK506-binding protein 2 precursor (EC 5.2.1.8)
(Peptidyl-prolyl cis- trans isomerase) (PPIase)
(Rotamase) (FKBP-13) (FKBP-15)
Length = 525
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 61/111 (54%), Gaps = 15/111 (13%)
Query: 429 VLDNGIKVEHLVEGNAKAKVASKGKQVCVRYCGRLINGEVIDPTNLDDDTHTFRLG---- 484
NG+ +E + G K AS GK+V V+Y G+L NG + D T + FRLG
Sbjct: 416 TFGNGMIIEEIEMGKPDGKKASPGKKVSVKYIGKLKNGTIFDST-VGRRAFDFRLGIGEV 474
Query: 485 ----------MRVGGKRRLTIPPAQGYGDVATPKIPANSWLVYEVELLEVK 525
MRVG KRRLTIPP+ GYG+ IP NS LV++VEL+ VK
Sbjct: 475 IKGWDIGINGMRVGDKRRLTIPPSMGYGNKRMGPIPQNSTLVFDVELVNVK 525
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.129 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,155,350
Number of extensions: 763100
Number of successful extensions: 1530
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1515
Number of HSP's successfully gapped: 6
Length of query: 531
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 425
Effective length of database: 11,501,117
Effective search space: 4887974725
Effective search space used: 4887974725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 158 (65.5 bits)