Os09g0103800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidylprolyl isomerase, FKBP-type domain containing protein.
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Os09g0103800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidylprolyl isomerase, FKBP-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 220.71 | 0.698 | 6 | 0.767 | 1.33 | -1.94 | 1.3 | 0.0534 | -0.768 | 9.53 | 21.7 | 3413 | -- | -- |
| 220.68 | 0.692 | 6 | 0.738 | 1.33 | -1.92 | 1.29 | -- | -0.77 | 9.52 | 21.7 | 3396 | -- | -- |
| 226.92 | 0.702 | 6 | 0.784 | 1.33 | -1.95 | -- | -0.0559 | -0.772 | 9.49 | 21.67 | 3415 | -- | -- |
| 226.92 | 0.702 | 6 | 0.771 | 1.32 | -1.92 | -- | -- | -0.774 | 9.49 | 21.72 | 3407 | -- | -- |
| 289.25 | 0.792 | 6.07 | 0.198 | -- | -1.91 | -- | -0.495 | -0.855 | -- | 21.96 | 796 | -- | -- |
| 324.23 | 0.844 | 6.15 | -0.344 | 1.41 | -- | 1.3 | -- | -1.44 | 9.62 | -- | -- | -- | -- |
| 330.54 | 0.851 | 6.15 | -0.295 | 1.4 | -- | -- | -- | -1.44 | 9.61 | -- | -- | -- | -- |
| 290.4 | 0.794 | 6.05 | 0.363 | -- | -1.92 | -- | -- | -0.824 | -- | 21.99 | 842 | -- | -- |
| 228.93 | 0.705 | 6.03 | -- | 1.27 | -1.62 | -- | -- | -0.902 | 9.34 | 22.25 | 2231 | -- | -- |
| 446.44 | 0.987 | 6.19 | -0.306 | -- | -- | -- | -- | -1.43 | -- | -- | -- | -- | -- |
| 332.83 | 0.853 | 6.14 | -- | 1.4 | -- | -- | -- | -1.4 | 9.62 | -- | -- | -- | -- |
| 293.59 | 0.798 | 6.06 | -- | -- | -1.84 | -- | -- | -0.886 | -- | 22 | 829 | -- | -- |
| 448.92 | 0.989 | 6.18 | -- | -- | -- | -- | -- | -1.4 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 216.72 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 2 | 216.98 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 3 | 217.02 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 61 | 218.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 89 | 218.65 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 17 |
| 150 | 219.43 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 165 | 219.59 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 204 | 220.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 587 | 224.58 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 682 | 225.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 759 | 226.27 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 783 | 226.48 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 898 | 227.89 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |