BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0103800 Os09g0103800|Os09g0103800
(531 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G25340.1 | chr4:12959657-12962632 REVERSE LENGTH=478 86 7e-17
AT5G05420.1 | chr5:1604040-1604823 REVERSE LENGTH=144 84 2e-16
AT3G12340.1 | chr3:3925720-3929346 REVERSE LENGTH=500 80 2e-15
AT3G25220.1 | chr3:9182691-9184463 FORWARD LENGTH=154 52 7e-07
>AT4G25340.1 | chr4:12959657-12962632 REVERSE LENGTH=478
Length = 477
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 77/148 (52%), Gaps = 27/148 (18%)
Query: 394 SDERYIFTGALETDIEQKNRGAENEQVEVHRCPFEVLDNGIKVEHLVEGNAKAKVASKGK 453
SDE +G +E K A+++ +V P NG+ VE L G K A GK
Sbjct: 341 SDEAAEISGTVE-----KQTPADSKSSQVRTYP-----NGLIVEELSMGKPNGKRADPGK 390
Query: 454 QVCVRYCGRL-INGEVIDPTNLDDDTHTFRL--------------GMRVGGKRRLTIPPA 498
V VRY G+L NG++ D +N+ FRL GMRVG KR+LTIPP+
Sbjct: 391 TVSVRYIGKLQKNGKIFD-SNIGKSPFKFRLGIGSVIKGWDVGVNGMRVGDKRKLTIPPS 449
Query: 499 QGYG-DVATPKIPANSWLVYEVELLEVK 525
GYG A +IP NSWL ++VEL+ V+
Sbjct: 450 MGYGVKGAGGQIPPNSWLTFDVELINVQ 477
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 4 FWGLELKPG--EAYTHHSAPARLRITQAVLGS-CDQGWTTLQCDTNDRETVRLCVLNPGL 60
FWGLE+KPG +AY + ++ +TQA LG+ + + +QC D+ + LC L P
Sbjct: 3 FWGLEVKPGKPQAYNPKNEQGKIHVTQATLGTGLSKEKSVIQCSIGDKAPIALCSLLPNK 62
Query: 61 AVACHLELEL-QKDENVLLSVDGQNSIHLSGY 91
C L LE DE V +V G SIHLSG+
Sbjct: 63 IECCPLNLEFDDDDEPVEFTVTGDRSIHLSGF 94
>AT5G05420.1 | chr5:1604040-1604823 REVERSE LENGTH=144
Length = 143
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 61/109 (55%), Gaps = 16/109 (14%)
Query: 432 NGIKVEHLVEGNAKAKVASKGKQVCVRYCGRLI-NGEVIDPTNLDDDTHTFRL------- 483
+G+ VE L GN K A GK+V V Y G+L NG++ D T + + FRL
Sbjct: 36 DGLIVEELCMGNPNGKKAEPGKRVSVHYTGKLQGNGKIFDST-VGKSRYKFRLDAGKVIK 94
Query: 484 -------GMRVGGKRRLTIPPAQGYGDVATPKIPANSWLVYEVELLEVK 525
GM VGGKR+LTIPP GYG IP +SWLV++VELL VK
Sbjct: 95 GLDVGLNGMLVGGKRKLTIPPEMGYGAEGAGSIPPDSWLVFDVELLNVK 143
>AT3G12340.1 | chr3:3925720-3929346 REVERSE LENGTH=500
Length = 499
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 19/118 (16%)
Query: 426 PFEV--LDNGIKVEHLVEGNAKAKVASKGKQVCVRYCGRLIN-GEVIDPTNLDDDTHTFR 482
P E L NG+ +E + +G K A KGK+V + Y G+L + G + D +NL +D FR
Sbjct: 383 PLETRTLSNGVIIEDIEKGKLDGKSAVKGKKVSILYTGKLKDTGNLFD-SNLGEDPLRFR 441
Query: 483 L--------------GMRVGGKRRLTIPPAQGYGDVATP-KIPANSWLVYEVELLEVK 525
L GMRVG KRRL IPPA GY K+P ++WLVYEVE ++++
Sbjct: 442 LGGENVIEGLSIGVEGMRVGDKRRLIIPPALGYSKRGLKEKVPKSAWLVYEVEAVKIR 499
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
Query: 4 FWGLELKPGEAYTHHSAPA----RLRITQAVLG-SCDQGWTTLQCDTNDRETVRLCVLNP 58
FWG+E+KPG+ +T + A RL ++QA LG + LQC+ ++ + LCVL P
Sbjct: 3 FWGVEVKPGKTFTLKNNEATGIRRLHLSQATLGHGTATNRSILQCNVGNKSPLLLCVLTP 62
Query: 59 GLAVACHLELELQKDENVLLSVDGQNSIHLSGYYTCSHSG 98
+C L LE ++ + V+ SV G S+HL+GY+ +G
Sbjct: 63 DKVDSCQLNLEFEETDEVIFSVIGPRSVHLTGYFLGRSTG 102
>AT3G25220.1 | chr3:9182691-9184463 FORWARD LENGTH=154
Length = 153
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 15/91 (16%)
Query: 449 ASKGKQVCVRYCGRLINGEVIDPTNLDDDTHTFRLGMR--------------VGGKRRLT 494
A KG ++ V Y G+L +G V D + D F LG VG KR+L
Sbjct: 49 AHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGTGQVIPGWDQGLLGACVGEKRKLK 108
Query: 495 IPPAQGYGDVAT-PKIPANSWLVYEVELLEV 524
IP GYGD + PKIP + L+++ EL+ V
Sbjct: 109 IPSKLGYGDNGSPPKIPGGATLIFDTELVAV 139
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.129 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,941,221
Number of extensions: 520791
Number of successful extensions: 1252
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1254
Number of HSP's successfully gapped: 6
Length of query: 531
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 428
Effective length of database: 8,282,721
Effective search space: 3545004588
Effective search space used: 3545004588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 114 (48.5 bits)