BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0567100 Os08g0567100|AK072895
         (293 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0567100  Epsin, N-terminal domain containing protein         432   e-121
Os01g0841000  ENTH/VHS domain containing protein                   69   3e-12

>Os08g0567100 Epsin, N-terminal domain containing protein
          Length = 293

 Score =  432 bits (1112), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/293 (76%), Positives = 224/293 (76%)

Query: 1   MDDYWRIAGVLRRRMARAGDWKEWRPVYKALVVLEFLLTHGPDEVPRDFLPDVAALRDLR 60
           MDDYWRIAGVLRRRMARAGDWKEWRPVYKALVVLEFLLTHGPDEVPRDFLPDVAALRDLR
Sbjct: 1   MDDYWRIAGVLRRRMARAGDWKEWRPVYKALVVLEFLLTHGPDEVPRDFLPDVAALRDLR 60

Query: 61  GFTHVDDRGFDWGACMQRRCDSVLSLLTDAEXXXXXXXXXXVSHSTHELVQQHGXXXXXX 120
           GFTHVDDRGFDWGACMQRRCDSVLSLLTDAE          VSHSTHELVQQHG      
Sbjct: 61  GFTHVDDRGFDWGACMQRRCDSVLSLLTDAERLRDARRRIRVSHSTHELVQQHGSPSSSS 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXTMVCHCAAAADYRHDKKFDAYTADDDWMQHLQV 180
                                      TMVCHCAAAADYRHDKKFDAYTADDDWMQHLQV
Sbjct: 121 GSPSSASSRTSSQSHASSWSVASSDSPTMVCHCAAAADYRHDKKFDAYTADDDWMQHLQV 180

Query: 181 HNTTTTLEYXXXXXXXXXCPNHPPLTTPRSWXXXXXXXXXXXXXXXXXRSWDAHVHDLSL 240
           HNTTTTLEY         CPNHPPLTTPRSW                 RSWDAHVHDLSL
Sbjct: 181 HNTTTTLEYDDDHDHDHDCPNHPPLTTPRSWDAHDDHDCPNHPPHTTPRSWDAHVHDLSL 240

Query: 241 LQRRGRPGTDATFCSRMLGAVNVSSRASGFQSLSQPERRSASKKLQRQLSMEY 293
           LQRRGRPGTDATFCSRMLGAVNVSSRASGFQSLSQPERRSASKKLQRQLSMEY
Sbjct: 241 LQRRGRPGTDATFCSRMLGAVNVSSRASGFQSLSQPERRSASKKLQRQLSMEY 293



>Os01g0841000 ENTH/VHS domain containing protein
          Length = 268

 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 57/87 (65%), Gaps = 1/87 (1%)

Query: 1   MDDYWRIAGVLRRRMARAGDWKEWRPVYKALVVLEFLLTHGPDEVPRDFLPDVAALRDLR 60
           +D+Y RI+ +L +R AR  D ++WR  YKAL++LE LLTHGP  V  +F  D   +  + 
Sbjct: 67  IDEYVRISDILHKRFARF-DRRQWREAYKALLLLEHLLTHGPRSVALEFQRDREVIEQMV 125

Query: 61  GFTHVDDRGFDWGACMQRRCDSVLSLL 87
            F H+D++GF+WG  ++ + + VL LL
Sbjct: 126 SFQHIDEKGFNWGMTVKSKSERVLRLL 152



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.134    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,356,296
Number of extensions: 277628
Number of successful extensions: 559
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 556
Number of HSP's successfully gapped: 2
Length of query: 293
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 193
Effective length of database: 11,814,401
Effective search space: 2280179393
Effective search space used: 2280179393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 155 (64.3 bits)