BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0556200 Os08g0556200|AK121222
         (135 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0556200  Similar to Dihydroneopterin aldolase                275   7e-75
Os06g0154600  Similar to Dihydroneopterin aldolase                185   1e-47

>Os08g0556200 Similar to Dihydroneopterin aldolase
          Length = 135

 Score =  275 bits (703), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 1   MAGKKEEEEAVVYRGDKLILRGLRFHGTHGVKPEEKKLGQKFVIDVDAWMDLAAAGDSDD 60
           MAGKKEEEEAVVYRGDKLILRGLRFHGTHGVKPEEKKLGQKFVIDVDAWMDLAAAGDSDD
Sbjct: 1   MAGKKEEEEAVVYRGDKLILRGLRFHGTHGVKPEEKKLGQKFVIDVDAWMDLAAAGDSDD 60

Query: 61  ISDTVSYTEIYRIAKNVVEGPSHNLLESVAQSIANSTLLKFPQISAVRVKVEKPHVAVQG 120
           ISDTVSYTEIYRIAKNVVEGPSHNLLESVAQSIANSTLLKFPQISAVRVKVEKPHVAVQG
Sbjct: 61  ISDTVSYTEIYRIAKNVVEGPSHNLLESVAQSIANSTLLKFPQISAVRVKVEKPHVAVQG 120

Query: 121 VLDYLGVEIFRQRKA 135
           VLDYLGVEIFRQRKA
Sbjct: 121 VLDYLGVEIFRQRKA 135



>Os06g0154600 Similar to Dihydroneopterin aldolase
          Length = 138

 Score =  185 bits (469), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 88/119 (73%), Positives = 103/119 (86%)

Query: 16  DKLILRGLRFHGTHGVKPEEKKLGQKFVIDVDAWMDLAAAGDSDDISDTVSYTEIYRIAK 75
           DKL+L  L+FHG HGVK EEK LGQKFV+DVDAWMDL+ AG++D ISDTVSYT+IY IAK
Sbjct: 10  DKLVLIDLQFHGFHGVKSEEKTLGQKFVVDVDAWMDLSVAGETDSISDTVSYTDIYGIAK 69

Query: 76  NVVEGPSHNLLESVAQSIANSTLLKFPQISAVRVKVEKPHVAVQGVLDYLGVEIFRQRK 134
           +VVEGPS NLLE+VA  IA++ LLKFPQIS +RVKV KPHVAV+G++DYLGVEI R RK
Sbjct: 70  DVVEGPSRNLLEAVAHRIASNALLKFPQISTIRVKVGKPHVAVRGIVDYLGVEILRHRK 128



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,346,380
Number of extensions: 158762
Number of successful extensions: 397
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 2
Length of query: 135
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 45
Effective length of database: 12,336,541
Effective search space: 555144345
Effective search space used: 555144345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 150 (62.4 bits)