Os06g0154600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Dihydroneopterin aldolase.
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Os06g0154600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Dihydroneopterin aldolase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.58 | 0.327 | 3.02 | -0.378 | 0.131 | 0.758 | -0.234 | -4.16 | 0.000734 | 1.87 | 30.3 | 317 | -- | -- |
| 49.19 | 0.327 | 2.98 | -0.0468 | 0.127 | 0.291 | -0.218 | -- | 0.00598 | 1.75 | 30.23 | 344 | -- | -- |
| 48.72 | 0.325 | 3.02 | -0.359 | 0.125 | 0.769 | -- | -4.22 | 0.00782 | 1.49 | 30.5 | 320 | -- | -- |
| 49.33 | 0.327 | 2.98 | -0.0507 | 0.128 | 0.302 | -- | -- | 0.00529 | 1.69 | 30.37 | 333 | -- | -- |
| 49.66 | 0.328 | 3.02 | -0.358 | -- | 0.763 | -- | -4.37 | 0.0114 | -- | 30.56 | 342 | -- | -- |
| 51.22 | 0.336 | 2.99 | -0.019 | 0.112 | -- | -0.167 | -- | -0.0189 | 23.4 | -- | -- | -- | -- |
| 51.32 | 0.335 | 2.99 | -0.0115 | 0.115 | -- | -- | -- | -0.0177 | 22.7 | -- | -- | -- | -- |
| 50.26 | 0.33 | 2.98 | -0.0404 | -- | 0.272 | -- | -- | 0.00617 | -- | 30.54 | 371 | -- | -- |
| 49.4 | 0.327 | 2.98 | -- | 0.124 | 0.297 | -- | -- | 0.0098 | 1.64 | 30.4 | 343 | -- | -- |
| 52.14 | 0.337 | 2.99 | -0.0092 | -- | -- | -- | -- | -0.0171 | -- | -- | -- | -- | -- |
| 51.32 | 0.335 | 2.99 | -- | 0.115 | -- | -- | -- | -0.0164 | 22.7 | -- | -- | -- | -- |
| 50.3 | 0.33 | 2.98 | -- | -- | 0.266 | -- | -- | 0.00949 | -- | 30.5 | 371 | -- | -- |
| 52.14 | 0.337 | 2.99 | -- | -- | -- | -- | -- | -0.016 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.01 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 22 |
| 2 | 48.13 | temperature | 25 | 270 | > th | dose independent | rect. | 2 | 1 |
| 3 | 48.13 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 21 |
| 5 | 48.16 | temperature | 25 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 13 | 48.43 | temperature | 15 | 10 | > th | dose dependent | rect. | 2 | 3 |
| 17 | 48.59 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 10 |
| 26 | 48.63 | humidity | 50 | 270 | > th | dose independent | rect. | 2 | 23 |
| 30 | 48.65 | temperature | 30 | 90 | < th | dose independent | rect. | 11 | 14 |
| 32 | 48.67 | temperature | 30 | 270 | > th | dose independent | rect. | 15 | 1 |
| 35 | 48.69 | temperature | 20 | 30 | > th | dose independent | rect. | 2 | 3 |
| 43 | 48.76 | humidity | 70 | 10 | > th | dose independent | rect. | 16 | 10 |
| 47 | 48.77 | temperature | 20 | 90 | > th | dose dependent | rect. | 14 | 15 |
| 48 | 48.79 | temperature | 30 | 270 | > th | dose independent | rect. | 14 | 3 |
| 50 | 48.81 | humidity | 70 | 90 | > th | dose independent | rect. | 16 | 9 |
| 58 | 48.85 | temperature | 30 | 270 | > th | dose independent | sin | 18 | NA |
| 59 | 48.85 | temperature | 30 | 270 | > th | dose independent | rect. | 11 | 8 |
| 74 | 48.85 | temperature | 30 | 270 | > th | dose independent | rect. | 14 | 22 |
| 75 | 48.85 | radiation | 1 | 10 | < th | dose dependent | rect. | 2 | 4 |
| 76 | 48.85 | radiation | 1 | 10 | < th | dose dependent | rect. | 2 | 6 |
| 88 | 48.87 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 2 | 3 |
| 99 | 48.88 | temperature | 30 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 104 | 48.90 | temperature | 30 | 270 | < th | dose independent | sin | 18 | NA |
| 109 | 48.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 14 |
| 125 | 48.91 | temperature | 30 | 90 | < th | dose independent | rect. | 9 | 16 |
| 135 | 48.92 | temperature | 30 | 270 | > th | dose dependent | sin | 23 | NA |
| 136 | 48.92 | atmosphere | 1000 | 30 | > th | dose dependent | rect. | 2 | 3 |
| 137 | 48.92 | temperature | 30 | 270 | > th | dose dependent | rect. | 11 | 6 |
| 176 | 48.93 | temperature | 30 | 270 | > th | dose dependent | sin | 21 | NA |
| 179 | 48.93 | temperature | 30 | 270 | > th | dose dependent | no | NA | NA |
| 316 | 48.93 | temperature | 30 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 324 | 48.94 | radiation | 1 | 10 | < th | dose independent | rect. | 2 | 4 |
| 358 | 48.94 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 23 |
| 368 | 48.95 | radiation | 1 | 10 | < th | dose independent | rect. | 2 | 6 |
| 375 | 48.95 | humidity | 50 | 90 | > th | dose independent | rect. | 5 | 21 |
| 439 | 48.98 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 5 |
| 476 | 49.01 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 8 |
| 499 | 49.02 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 603 | 49.02 | temperature | 10 | 90 | > th | dose dependent | rect. | 1 | 22 |
| 618 | 49.03 | temperature | 30 | 270 | > th | dose dependent | rect. | 15 | 1 |
| 773 | 49.04 | temperature | 25 | 90 | > th | dose dependent | rect. | 14 | 9 |
| 852 | 49.08 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 853 | 49.08 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 8 |
| 944 | 49.13 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 16 |
| 953 | 49.13 | humidity | 50 | 10 | > th | dose dependent | rect. | 16 | 10 |