BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0154600 Os06g0154600|Os06g0154600
(138 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G11750.1 | chr3:3715071-3715904 REVERSE LENGTH=147 147 1e-36
AT5G62980.1 | chr5:25276384-25277083 FORWARD LENGTH=132 142 5e-35
AT3G21730.1 | chr3:7659761-7661179 REVERSE LENGTH=161 128 9e-31
>AT3G11750.1 | chr3:3715071-3715904 REVERSE LENGTH=147
Length = 146
Score = 147 bits (372), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 68/119 (57%), Positives = 92/119 (77%), Gaps = 1/119 (0%)
Query: 10 DKLVLIDLQFHGFHGVKSEEKTLGQKFVVDVDAWMDLSVAGETDSISDTVSYTDIYGIAK 69
DKL+L L+F+GFHG +EE+TLGQ F+VD+DAW+ L AGE+D++ DT+SY DI+ +AK
Sbjct: 22 DKLILKGLKFYGFHGAIAEERTLGQMFLVDIDAWVSLKKAGESDNLEDTISYVDIFSLAK 81
Query: 70 DVVEGPSRNLLEAVAHRIASNALLKFPQISTIRVKVGKPHVA-VRGIVDYLGVEILRHR 127
++VEG RNLLE VA IAS L KF QI+ +RVK+ KP+VA ++ +DYLGV+I R R
Sbjct: 82 EIVEGSPRNLLETVAELIASKTLEKFHQINAVRVKLSKPNVALIKSTIDYLGVDIFRQR 140
>AT5G62980.1 | chr5:25276384-25277083 FORWARD LENGTH=132
Length = 131
Score = 142 bits (359), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 70/119 (58%), Positives = 91/119 (76%), Gaps = 1/119 (0%)
Query: 10 DKLVLIDLQFHGFHGVKSEEKTLGQKFVVDVDAWMDLSVAGETDSISDTVSYTDIYGIAK 69
DKL+L L+F+GFHG EEKTLGQ F++D+DAWM L AG +D+++D+VSY DIY +AK
Sbjct: 10 DKLILRGLKFYGFHGAIPEEKTLGQMFMLDIDAWMCLKKAGLSDNLADSVSYVDIYNVAK 69
Query: 70 DVVEGPSRNLLEAVAHRIASNALLKFPQISTIRVKVGKPHVA-VRGIVDYLGVEILRHR 127
+VVEG SRNLLE VA IAS L P+I+ +RVK+ KP+VA ++ +DYLGVEI R R
Sbjct: 70 EVVEGSSRNLLERVAGLIASKTLEISPRITAVRVKLWKPNVALIQSTIDYLGVEIFRDR 128
>AT3G21730.1 | chr3:7659761-7661179 REVERSE LENGTH=161
Length = 160
Score = 128 bits (322), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 85/125 (68%), Gaps = 1/125 (0%)
Query: 5 ELIDRDKLVLIDLQFHGFHGVKSEEKTLGQKFVVDVDAWMDLSVAGETDSISDTVSYTDI 64
E + DKL+L L+F+GFHGV EE+ LG F+VD++ W+ L A E+D+++DTVS+ D
Sbjct: 35 ESLPEDKLILRGLKFYGFHGVLPEERELGGLFIVDINLWLSLKKAIESDNLADTVSFADT 94
Query: 65 YGIAKDVVEGPSRNLLEAVAHRIASNALLKFPQISTIRVKVGKPHVA-VRGIVDYLGVEI 123
+ + K +VEGP RNL E VA IAS L FP+I+ IRVK GKP+ + V VD+LG E+
Sbjct: 95 FRLVKKIVEGPPRNLYETVADDIASEMLETFPKINVIRVKFGKPNPSLVNSTVDFLGAEL 154
Query: 124 LRHRK 128
R R
Sbjct: 155 FRKRN 159
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.139 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,851,186
Number of extensions: 104916
Number of successful extensions: 277
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 274
Number of HSP's successfully gapped: 3
Length of query: 138
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 50
Effective length of database: 8,693,961
Effective search space: 434698050
Effective search space used: 434698050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 106 (45.4 bits)