Os08g0556200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Dihydroneopterin aldolase.
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Os08g0556200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Dihydroneopterin aldolase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.03 | 0.436 | 8.82 | -0.763 | 1.14 | -2.12 | -0.526 | -2.42 | -0.235 | 13.4 | 0.6239 | 1433 | -- | -- |
| 88.93 | 0.439 | 8.82 | -0.968 | 1.11 | -1.53 | -0.582 | -- | -0.227 | 13.4 | 0.6511 | 1436 | -- | -- |
| 87.06 | 0.435 | 8.83 | -0.763 | 1.15 | -2.11 | -- | -2.4 | -0.236 | 13.3 | 0.57 | 1428 | -- | -- |
| 89.92 | 0.442 | 8.87 | -1.01 | 1.1 | -1.54 | -- | -- | -0.272 | 13.3 | 0.8091 | 1436 | -- | -- |
| 96.13 | 0.457 | 8.89 | -1.07 | -- | -2.51 | -- | 0.0807 | -0.318 | -- | 0.9983 | 1684 | -- | -- |
| 115.42 | 0.504 | 8.82 | -0.596 | 1.1 | -- | -0.753 | -- | -0.065 | 13.4 | -- | -- | -- | -- |
| 117.71 | 0.508 | 8.82 | -0.622 | 1.1 | -- | -- | -- | -0.0695 | 13.4 | -- | -- | -- | -- |
| 95.78 | 0.456 | 8.88 | -1 | -- | -2.38 | -- | -- | -0.302 | -- | 1.312 | 1691 | -- | -- |
| 113.37 | 0.496 | 8.86 | -- | 1.01 | -1.2 | -- | -- | -0.143 | 13.5 | 1.471 | 1465 | -- | -- |
| 191.76 | 0.647 | 8.83 | -0.665 | -- | -- | -- | -- | -0.0924 | -- | -- | -- | -- | -- |
| 127.9 | 0.529 | 8.8 | -- | 1.11 | -- | -- | -- | -0.000225 | 13.4 | -- | -- | -- | -- |
| 119.99 | 0.51 | 8.85 | -- | -- | -2.06 | -- | -- | -0.157 | -- | 1.789 | 1749 | -- | -- |
| 203.43 | 0.666 | 8.82 | -- | -- | -- | -- | -- | -0.0187 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.13 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 2 | 84.85 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 5 | 84.96 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 6 | 84.97 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 16 | 7 |
| 9 | 84.98 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 24 | 85.15 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 15 | NA |
| 35 | 85.28 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 18 |
| 38 | 85.29 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 16 |
| 41 | 85.30 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 14 |
| 80 | 85.82 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 92 | 85.94 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 99 | 85.96 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 120 | 86.08 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 124 | 86.10 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 15 |
| 125 | 86.11 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 13 |
| 130 | 86.13 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 11 |
| 177 | 86.44 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 16 | 7 |
| 179 | 86.45 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 16 | 5 |
| 191 | 86.58 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 192 | 86.59 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 206 | 86.73 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 19 |
| 212 | 86.84 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 268 | 87.02 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 278 | 87.05 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 285 | 87.05 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 313 | 87.12 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 351 | 87.61 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 382 | 87.83 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 13 | 7 |
| 412 | 87.95 | wind | 5.0 | 43200 | < th | dose independent | rect. | 5 | 15 |
| 416 | 87.98 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 421 | 88.00 | wind | 7.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 422 | 88.00 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 424 | 88.01 | radiation | 1.0 | 4320 | > th | dose independent | sin | 14 | NA |
| 425 | 88.01 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 432 | 88.04 | wind | 5.0 | 43200 | > th | dose independent | rect. | 9 | 12 |
| 434 | 88.04 | wind | 5.0 | 43200 | > th | dose independent | rect. | 5 | 15 |
| 486 | 88.24 | wind | 5.0 | 43200 | < th | dose independent | sin | 22 | NA |
| 488 | 88.24 | wind | 7.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 505 | 88.28 | wind | 5.0 | 43200 | > th | dose independent | sin | 22 | NA |
| 511 | 88.29 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 7 |
| 513 | 88.30 | radiation | 1.0 | 4320 | < th | dose independent | sin | 14 | NA |
| 543 | 88.38 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 564 | 88.43 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 566 | 88.43 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 614 | 88.56 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 655 | 88.64 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 14 |
| 667 | 88.66 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 689 | 88.73 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 7 | 14 |
| 691 | 88.74 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 7 | 12 |
| 723 | 88.80 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 735 | 88.83 | wind | 3.0 | 43200 | > th | dose dependent | sin | 23 | NA |
| 743 | 88.84 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 21 |
| 811 | 88.98 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 831 | 89.02 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 948 | 89.22 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 5 | 19 |
| 995 | 89.30 | wind | 5.0 | 43200 | > th | dose independent | rect. | 15 | 7 |
| 997 | 89.30 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 11 |