BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0556200 Os08g0556200|AK121222
(135 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G62980.1 | chr5:25276384-25277083 FORWARD LENGTH=132 155 5e-39
AT3G11750.1 | chr3:3715071-3715904 REVERSE LENGTH=147 152 5e-38
AT3G21730.1 | chr3:7659761-7661179 REVERSE LENGTH=161 133 2e-32
>AT5G62980.1 | chr5:25276384-25277083 FORWARD LENGTH=132
Length = 131
Score = 155 bits (392), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 77/127 (60%), Positives = 97/127 (76%), Gaps = 1/127 (0%)
Query: 8 EEAVVYRGDKLILRGLRFHGTHGVKPEEKKLGQKFVIDVDAWMDLAAAGDSDDISDTVSY 67
E+ + GDKLILRGL+F+G HG PEEK LGQ F++D+DAWM L AG SD+++D+VSY
Sbjct: 2 EKDMAMMGDKLILRGLKFYGFHGAIPEEKTLGQMFMLDIDAWMCLKKAGLSDNLADSVSY 61
Query: 68 TEIYRIAKNVVEGPSHNLLESVAQSIANSTLLKFPQISAVRVKVEKPHVA-VQGVLDYLG 126
+IY +AK VVEG S NLLE VA IA+ TL P+I+AVRVK+ KP+VA +Q +DYLG
Sbjct: 62 VDIYNVAKEVVEGSSRNLLERVAGLIASKTLEISPRITAVRVKLWKPNVALIQSTIDYLG 121
Query: 127 VEIFRQR 133
VEIFR R
Sbjct: 122 VEIFRDR 128
>AT3G11750.1 | chr3:3715071-3715904 REVERSE LENGTH=147
Length = 146
Score = 152 bits (384), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 70/122 (57%), Positives = 96/122 (78%), Gaps = 1/122 (0%)
Query: 15 GDKLILRGLRFHGTHGVKPEEKKLGQKFVIDVDAWMDLAAAGDSDDISDTVSYTEIYRIA 74
GDKLIL+GL+F+G HG EE+ LGQ F++D+DAW+ L AG+SD++ DT+SY +I+ +A
Sbjct: 21 GDKLILKGLKFYGFHGAIAEERTLGQMFLVDIDAWVSLKKAGESDNLEDTISYVDIFSLA 80
Query: 75 KNVVEGPSHNLLESVAQSIANSTLLKFPQISAVRVKVEKPHVA-VQGVLDYLGVEIFRQR 133
K +VEG NLLE+VA+ IA+ TL KF QI+AVRVK+ KP+VA ++ +DYLGV+IFRQR
Sbjct: 81 KEIVEGSPRNLLETVAELIASKTLEKFHQINAVRVKLSKPNVALIKSTIDYLGVDIFRQR 140
Query: 134 KA 135
Sbjct: 141 NT 142
>AT3G21730.1 | chr3:7659761-7661179 REVERSE LENGTH=161
Length = 160
Score = 133 bits (335), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 88/120 (73%), Gaps = 1/120 (0%)
Query: 16 DKLILRGLRFHGTHGVKPEEKKLGQKFVIDVDAWMDLAAAGDSDDISDTVSYTEIYRIAK 75
DKLILRGL+F+G HGV PEE++LG F++D++ W+ L A +SD+++DTVS+ + +R+ K
Sbjct: 40 DKLILRGLKFYGFHGVLPEERELGGLFIVDINLWLSLKKAIESDNLADTVSFADTFRLVK 99
Query: 76 NVVEGPSHNLLESVAQSIANSTLLKFPQISAVRVKVEKPHVA-VQGVLDYLGVEIFRQRK 134
+VEGP NL E+VA IA+ L FP+I+ +RVK KP+ + V +D+LG E+FR+R
Sbjct: 100 KIVEGPPRNLYETVADDIASEMLETFPKINVIRVKFGKPNPSLVNSTVDFLGAELFRKRN 159
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.134 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,851,249
Number of extensions: 106795
Number of successful extensions: 264
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 3
Length of query: 135
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 47
Effective length of database: 8,693,961
Effective search space: 408616167
Effective search space used: 408616167
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 106 (45.4 bits)