BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0554100 Os08g0554100|AK120710
(658 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0554100 Similar to MYST1 protein (Fragment) 1340 0.0
Os08g0554300 Similar to MYST1 protein (Fragment) 1163 0.0
Os12g0131900 Similar to MYST1 protein (Fragment) 676 0.0
Os11g0134100 Rhamnogalacturonate lyase family protein 640 0.0
>Os08g0554100 Similar to MYST1 protein (Fragment)
Length = 658
Score = 1340 bits (3469), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 646/658 (98%), Positives = 646/658 (98%)
Query: 1 MGKLSCKNLLPCCMGHXXXXXXXXXXXXVSVKVSDRYVEIKNGIFELTLSNPDGIVTGVR 60
MGKLSCKNLLPCCMGH VSVKVSDRYVEIKNGIFELTLSNPDGIVTGVR
Sbjct: 1 MGKLSCKNLLPCCMGHPPATSPAGATAGVSVKVSDRYVEIKNGIFELTLSNPDGIVTGVR 60
Query: 61 YNGVDNLMEILNKEDNRGYWDLVWSKLGERTGIFDVIKGTEFRIIYQDENHAEVSFVRTW 120
YNGVDNLMEILNKEDNRGYWDLVWSKLGERTGIFDVIKGTEFRIIYQDENHAEVSFVRTW
Sbjct: 61 YNGVDNLMEILNKEDNRGYWDLVWSKLGERTGIFDVIKGTEFRIIYQDENHAEVSFVRTW 120
Query: 121 DPSLEGKAVPLNIDKRFIVLRGCSGFYTYGIYEHQEGWPGFSLGETRVAFKLRKDKFHYM 180
DPSLEGKAVPLNIDKRFIVLRGCSGFYTYGIYEHQEGWPGFSLGETRVAFKLRKDKFHYM
Sbjct: 121 DPSLEGKAVPLNIDKRFIVLRGCSGFYTYGIYEHQEGWPGFSLGETRVAFKLRKDKFHYM 180
Query: 181 ALADDRQRIMPMPEDRVPPRGQQLAYPEAVLLVDPINPDLRGEVDDKYQYSCEDQYNNVH 240
ALADDRQRIMPMPEDRVPPRGQQLAYPEAVLLVDPINPDLRGEVDDKYQYSCEDQYNNVH
Sbjct: 181 ALADDRQRIMPMPEDRVPPRGQQLAYPEAVLLVDPINPDLRGEVDDKYQYSCEDQYNNVH 240
Query: 241 GWISFDPPIGFWQITPSDEFRTGGPVKQNLTSHVGPTMLAMFLSGHYAGDDLTPKFLTGE 300
GWISFDPPIGFWQITPSDEFRTGGPVKQNLTSHVGPTMLAMFLSGHYAGDDLTPKFLTGE
Sbjct: 241 GWISFDPPIGFWQITPSDEFRTGGPVKQNLTSHVGPTMLAMFLSGHYAGDDLTPKFLTGE 300
Query: 301 YWKKVHGPVFMYLNSSWDGSDPTLLWEDAKVQMMIEKESWPYCFALSDDFQKTEQRGCIS 360
YWKKVHGPVFMYLNSSWDGSDPTLLWEDAKVQMMIEKESWPYCFALSDDFQKTEQRGCIS
Sbjct: 301 YWKKVHGPVFMYLNSSWDGSDPTLLWEDAKVQMMIEKESWPYCFALSDDFQKTEQRGCIS 360
Query: 361 GRLLVRDRYLDDADLYATSAYVGLALPGDVGSWQRECKGYQFWCRAEDDGSFCIRNIVAG 420
GRLLVRDRYLDDADLYATSAYVGLALPGDVGSWQRECKGYQFWCRAEDDGSFCIRNIVAG
Sbjct: 361 GRLLVRDRYLDDADLYATSAYVGLALPGDVGSWQRECKGYQFWCRAEDDGSFCIRNIVAG 420
Query: 421 DYNLYAWVPGFIGDYKLDAKLTISSGDDIYLGDLVYEPPRDGPTMWEIGIPDRSASEFFV 480
DYNLYAWVPGFIGDYKLDAKLTISSGDDIYLGDLVYEPPRDGPTMWEIGIPDRSASEFFV
Sbjct: 421 DYNLYAWVPGFIGDYKLDAKLTISSGDDIYLGDLVYEPPRDGPTMWEIGIPDRSASEFFV 480
Query: 481 PDPNPNYVNRLYINHPDRFRQYGLWERYAELYPDGDLVYTIGQSDYTTDWFFAQVNRRTD 540
PDPNPNYVNRLYINHPDRFRQYGLWERYAELYPDGDLVYTIGQSDYTTDWFFAQVNRRTD
Sbjct: 481 PDPNPNYVNRLYINHPDRFRQYGLWERYAELYPDGDLVYTIGQSDYTTDWFFAQVNRRTD 540
Query: 541 QSTYQPTTWQIKFNLDSVSPNSTYKFRVALASSANAELQVRFNDQDRTAPHFTTGLIGKD 600
QSTYQPTTWQIKFNLDSVSPNSTYKFRVALASSANAELQVRFNDQDRTAPHFTTGLIGKD
Sbjct: 541 QSTYQPTTWQIKFNLDSVSPNSTYKFRVALASSANAELQVRFNDQDRTAPHFTTGLIGKD 600
Query: 601 NTIARHGIHGLYWLFNIDVSGAWLVQGMNTIYLKQPRNQSPFQGLMYDYLRMEGPSGS 658
NTIARHGIHGLYWLFNIDVSGAWLVQGMNTIYLKQPRNQSPFQGLMYDYLRMEGPSGS
Sbjct: 601 NTIARHGIHGLYWLFNIDVSGAWLVQGMNTIYLKQPRNQSPFQGLMYDYLRMEGPSGS 658
>Os08g0554300 Similar to MYST1 protein (Fragment)
Length = 606
Score = 1163 bits (3009), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/630 (90%), Positives = 578/630 (91%), Gaps = 40/630 (6%)
Query: 29 VSVKVSDRYVEIKNGIFELTLSNPDGIVTGVRYNGVDNLMEILNKEDNRGYWDLVWSKLG 88
VSV VSDRYVEIKNGIFE+TLSNPDGIVTGVRYNGVDNLMEILNKED RGYWDLVWSKLG
Sbjct: 17 VSVMVSDRYVEIKNGIFEVTLSNPDGIVTGVRYNGVDNLMEILNKEDKRGYWDLVWSKLG 76
Query: 89 ERTGIFDVIKGTEFRIIYQDENHAEVSFVRTWDPSLEGKAVPLNIDKRFIVLRGCSGFYT 148
ERTGIFDVIKGTEFRIIYQDEN AEVSFVRTWDPSLEGKAVPLNIDKRF
Sbjct: 77 ERTGIFDVIKGTEFRIIYQDENQAEVSFVRTWDPSLEGKAVPLNIDKRF----------- 125
Query: 149 YGIYEHQEGWPGFSLGETRVAFKLRKDKFHYMALADDRQRIMPMPEDRVPPRGQQLAYPE 208
HYMALADDR+RIMPMPEDRV PRGQQLAYPE
Sbjct: 126 -----------------------------HYMALADDRKRIMPMPEDRVSPRGQQLAYPE 156
Query: 209 AVLLVDPINPDLRGEVDDKYQYSCEDQYNNVHGWISFDPPIGFWQITPSDEFRTGGPVKQ 268
AVLLVDPINPDLRGEVDDKYQYSCE+QYNNVHGWISFDPPIGFWQITPSDEFRTGGPVKQ
Sbjct: 157 AVLLVDPINPDLRGEVDDKYQYSCENQYNNVHGWISFDPPIGFWQITPSDEFRTGGPVKQ 216
Query: 269 NLTSHVGPTMLAMFLSGHYAGDDLTPKFLTGEYWKKVHGPVFMYLNSSWDGSDPTLLWED 328
NLTSHVGPTMLAMFLSGHYAGDDLTPKF+TGEYWKKVHGPVFMYLNSSWDGS+PTLLW+D
Sbjct: 217 NLTSHVGPTMLAMFLSGHYAGDDLTPKFMTGEYWKKVHGPVFMYLNSSWDGSNPTLLWKD 276
Query: 329 AKVQMMIEKESWPYCFALSDDFQKTEQRGCISGRLLVRDRYLDDADLYATSAYVGLALPG 388
AKVQMMIEKESWPY FALSDDFQKTEQRG ISGRLLVRDRYL DADLY TSAYVGLALPG
Sbjct: 277 AKVQMMIEKESWPYYFALSDDFQKTEQRGRISGRLLVRDRYLHDADLYGTSAYVGLALPG 336
Query: 389 DVGSWQRECKGYQFWCRAEDDGSFCIRNIVAGDYNLYAWVPGFIGDYKLDAKLTISSGDD 448
DVGSWQRECKGYQFWCRA D GSF IRNIVAGDYNLYAWVPGFIGDYKLDAKLTISSGDD
Sbjct: 337 DVGSWQRECKGYQFWCRAHDGGSFSIRNIVAGDYNLYAWVPGFIGDYKLDAKLTISSGDD 396
Query: 449 IYLGDLVYEPPRDGPTMWEIGIPDRSASEFFVPDPNPNYVNRLYINHPDRFRQYGLWERY 508
IYLGDLVYEPPRDGPTMWEIGIPDRSASEF+VPDPNPNYVNRLYINHPDRFRQYGLWERY
Sbjct: 397 IYLGDLVYEPPRDGPTMWEIGIPDRSASEFYVPDPNPNYVNRLYINHPDRFRQYGLWERY 456
Query: 509 AELYPDGDLVYTIGQSDYTTDWFFAQVNRRTDQSTYQPTTWQIKFNLDSVSPNSTYKFRV 568
AELYPDGDLVYTIGQSDYTTDWFFAQVNRRTDQSTYQPTTWQIKFNLDSVSPNSTYKFRV
Sbjct: 457 AELYPDGDLVYTIGQSDYTTDWFFAQVNRRTDQSTYQPTTWQIKFNLDSVSPNSTYKFRV 516
Query: 569 ALASSANAELQVRFNDQDRTAPHFTTGLIGKDNTIARHGIHGLYWLFNIDVSGAWLVQGM 628
ALASSANAELQVRFN+QDRTAPHFTTGLIGKDNTIARHGIH LYWLFNIDVSGAWLVQGM
Sbjct: 517 ALASSANAELQVRFNNQDRTAPHFTTGLIGKDNTIARHGIHALYWLFNIDVSGAWLVQGM 576
Query: 629 NTIYLKQPRNQSPFQGLMYDYLRMEGPSGS 658
NTIYLKQPRNQSPFQGLMYDYLRMEGPSGS
Sbjct: 577 NTIYLKQPRNQSPFQGLMYDYLRMEGPSGS 606
>Os12g0131900 Similar to MYST1 protein (Fragment)
Length = 1321
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/647 (51%), Positives = 432/647 (66%), Gaps = 23/647 (3%)
Query: 29 VSVKVSDRYVEIKNGIFELTLSNPDGIVTGVRYNGVDNLMEILNKEDNRGYWDLVWSKLG 88
V++ + R V + NGI +++LS P G +TGVRYNG NL+ + ++ GYWD+VW+ G
Sbjct: 48 VTLHLDHRQVMVDNGIVQVSLSKPGGHITGVRYNGERNLLRFDGQPNSAGYWDVVWNFPG 107
Query: 89 ERT--GIFDVIKGTEFRIIYQDENHAEVSFVRTWDPSLEGKAVPLNIDKRFIVLRGCSGF 146
G+ D++ TEF+++ E+ E+SF T++PS +V LNIDKR ++L+G SGF
Sbjct: 108 SNNPRGMIDMLDSTEFKVVSSSEDQVELSFRSTYNPS-RPNSVRLNIDKRLVMLKGSSGF 166
Query: 147 YTYGIYEHQEGWPGFSLGETRVAFKLRKD-------------KFHYMALADDRQRIMPMP 193
Y Y I+EH WP ++ E R+AFKL D +F+YMA++DD QR MP
Sbjct: 167 YCYAIFEHVRDWPALNISEARLAFKLNTDNLILKTCVHERFVRFNYMAISDDIQRFMPSA 226
Query: 194 EDRVPPRGQQLAYPEAVLLVDPINPDLRGEVDDKYQYSCEDQYNNVHGWISFDPP--IGF 251
DR PRG LAY EAVLLVDP P RGEVDDKY+YS +++ N VHGWIS + P +GF
Sbjct: 227 TDRDAPRGAPLAYKEAVLLVDPKEPQFRGEVDDKYEYSLDNKDNRVHGWISSNHPNPMGF 286
Query: 252 WQITPSDEFRTGGPVKQNLTSHVGPTMLAMFLSGHYAGDDLTPKFLTGEYWKKVHGPVFM 311
W ITPS+EF++GGP+K+ LTSHVGPT L MFL HY G+D+ K GEYWKKV GPVF+
Sbjct: 287 WVITPSNEFKSGGPLKRELTSHVGPTSLTMFLGTHYVGNDIVLKIEEGEYWKKVMGPVFI 346
Query: 312 YLNSSWDGSDPTLLWEDAKVQMMIEKESWPYCFALSDDFQKTEQRGCISGRLLVRDRYLD 371
YLNS+ D LW DAK+Q E WPY F +S DF K QRG ++GRL VRDRY+
Sbjct: 347 YLNSNPRRGDLHSLWVDAKLQAEAEARKWPYSFPVSPDFHKASQRGSVTGRLFVRDRYMS 406
Query: 372 DADLYATSAYVGLALPGDVGSWQRECKGYQFWCRAEDDGSFCIRNIVAGDYNLYAWVPGF 431
D+ A A+VGLA PG GSW E K YQFW RA GSF I N+ AG YNLYAWVPGF
Sbjct: 407 SKDMAAGMAFVGLATPGQPGSWVTESKNYQFWTRATPCGSFSISNVRAGVYNLYAWVPGF 466
Query: 432 IGDYKLDAKLTISSGDDIYLGDLVYEPPRDGPTMWEIGIPDRSASEFFVPDPNPNYVNRL 491
+GDY +++T++ G I LGDLV+EPPR GPT+WE+G+PDRSA+EFF+PDPNP Y+N++
Sbjct: 467 LGDYMYTSQVTVTPGRGINLGDLVFEPPRSGPTLWEMGVPDRSAAEFFIPDPNPKYLNKI 526
Query: 492 YINHPDRFRQYGLWERYAELYPDGDLVYTIGQSDYTTDWFFAQVNRRTDQSTYQPTTWQI 551
+I D++RQYGLWERYAELYPDGDLV+TIG+SD + DWFFA V R+ Y TT QI
Sbjct: 527 FITK-DKYRQYGLWERYAELYPDGDLVFTIGESDISKDWFFAHVTRKQGDG-YAATTRQI 584
Query: 552 KFNLDSVSPNSTYKFRVALASSANAELQVRFNDQDRTAPHFTTGLIGKDNTIARHGIHGL 611
+F L+ V ++TY RV LA++ A +QV N + A T G N IARHG HG+
Sbjct: 585 RFRLERVVADATYTLRVELAAAQMARVQVVVNGRADEA-LTTAAAFGDGNAIARHGAHGV 643
Query: 612 YWLFNIDVSGAWLVQG--MNTIYLKQPRNQSPFQGLMYDYLRMEGPS 656
W + G LV+G N +++ Q R SPF G+MYDY+R P+
Sbjct: 644 QWSLEFAIKGYMLVEGEEENVVFITQTRALSPFFGVMYDYIRCSVPA 690
>Os11g0134100 Rhamnogalacturonate lyase family protein
Length = 644
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/629 (50%), Positives = 406/629 (64%), Gaps = 43/629 (6%)
Query: 29 VSVKVSDRYVEIKNGIFELTLSNPDGIVTGVRYNGVDNLMEILNKEDNRGYWDLVWSKLG 88
V++ + R V + NGI ++TLSNP G +TGVRYNG NL+ + ++ GYWD+VW+
Sbjct: 45 VTLHLDHRQVMVDNGIVQVTLSNPGGHITGVRYNGERNLLHYDGEANSAGYWDVVWN--- 101
Query: 89 ERTGIFDVIKGTEFRIIYQDENHAEVSFVRTWDPSLEGKAVPLNIDKRFIVLRGCSGFYT 148
G P + ++L+G SGFY
Sbjct: 102 -----------------------------------FPGSNSPRGMIDMLVMLKGSSGFYC 126
Query: 149 YGIYEHQEGWPGFSLGETRVAFKLRKDKFHYMALADDRQRIMPMPEDRVPPRGQQLAYPE 208
Y I+EH WP ++ E R+AFKL DKF+YMA++DD QR MP DR PRG LAY E
Sbjct: 127 YAIFEHVRDWPALNISEARLAFKLNTDKFNYMAISDDIQRFMPSATDRDAPRGAPLAYKE 186
Query: 209 AVLLVDPINPDLRGEVDDKYQYSCEDQYNNVHGWISFDPP--IGFWQITPSDEFRTGGPV 266
AVLLVDP P RGEVDDKY+YS +++ N VHGWIS + P +GFW ITPS+EF++GGP+
Sbjct: 187 AVLLVDPKEPQFRGEVDDKYEYSLDNKDNRVHGWISSNHPNPMGFWVITPSNEFKSGGPL 246
Query: 267 KQNLTSHVGPTMLAMFLSGHYAGDDLTPKFLTGEYWKKVHGPVFMYLNSSWDGSDPTLLW 326
K+ LTSHVGPT L MFL HY G+D+ K GEYWKKV GPVF+YLNS+ D LW
Sbjct: 247 KRELTSHVGPTSLTMFLGTHYVGNDIVLKIEEGEYWKKVMGPVFIYLNSNPRRGDLHSLW 306
Query: 327 EDAKVQMMIEKESWPYCFALSDDFQKTEQRGCISGRLLVRDRYLDDADLYATSAYVGLAL 386
DAKVQ +E WPY F S DF K QRG ++GRL V+DRY+ D+ A AYVGLA
Sbjct: 307 VDAKVQAEVEARKWPYSFPESPDFHKAGQRGSVTGRLFVKDRYVSSKDIAAGMAYVGLAS 366
Query: 387 PGDVGSWQRECKGYQFWCRAEDDGSFCIRNIVAGDYNLYAWVPGFIGDYKLDAKLTISSG 446
PG GSW E YQFW RA GSF I N+ AG YNLYAWVPGF+GDY +++T++ G
Sbjct: 367 PGQPGSWATESNNYQFWTRATPCGSFSIGNVRAGVYNLYAWVPGFLGDYMYTSQVTVTPG 426
Query: 447 DDIYLGDLVYEPPRDGPTMWEIGIPDRSASEFFVPDPNPNYVNRLYINHPDRFRQYGLWE 506
I LGDLV+EPPR GPT+WE+G+PDRSA+EFF+PDPNP Y+N+++I D++RQYGLWE
Sbjct: 427 RSINLGDLVFEPPRSGPTLWEMGVPDRSAAEFFIPDPNPKYLNKIFITK-DKYRQYGLWE 485
Query: 507 RYAELYPDGDLVYTIGQSDYTTDWFFAQVNRRTDQSTYQPTTWQIKFNLDSVSPNSTYKF 566
RYAELYPDGDLV+TIG++D + DWFFA + R+ Y PTT QI+F L+ V ++TY
Sbjct: 486 RYAELYPDGDLVFTIGENDISKDWFFAHITRKQGDG-YAPTTRQIRFRLEHVVADATYTL 544
Query: 567 RVALASSANAELQVRFNDQDRTAPHFTTGLIGKDNTIARHGIHGLYWLFNIDVSGAWLVQ 626
RV LA++ + +QV N A T G N IARHG+HG+ W + + G L +
Sbjct: 545 RVELAAAQMSRVQVVVNGSADEA-LTTAAAFGDGNAIARHGVHGVQWSLDFAMKGYMLQE 603
Query: 627 GMNTIYLKQPRNQSPFQGLMYDYLRMEGP 655
G N + + Q R SPF G+MYDY+R+EGP
Sbjct: 604 GDNVVLMTQTRALSPFFGVMYDYIRLEGP 632
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.140 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 25,303,277
Number of extensions: 1179067
Number of successful extensions: 1751
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1739
Number of HSP's successfully gapped: 6
Length of query: 658
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 551
Effective length of database: 11,448,903
Effective search space: 6308345553
Effective search space used: 6308345553
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)