BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0542300 Os08g0542300|J065019N01
         (54 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0542300  Similar to 60S ribosomal protein L7-2               116   5e-27
Os08g0542100  Ribosomal protein L7, eukaryotic form family p...    87   2e-18
Os04g0605900  Similar to 60S ribosomal protein L7-2                67   2e-12
Os08g0234000  Similar to 60S ribosomal protein L7-2                65   1e-11

>Os08g0542300 Similar to 60S ribosomal protein L7-2
          Length = 54

 Score =  116 bits (290), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 54/54 (100%), Positives = 54/54 (100%)

Query: 1  SWLTSSDLFKKALGEHGIICLEDEHEIATVGPHFRQASNFLMPFKLKCQEGGYR 54
          SWLTSSDLFKKALGEHGIICLEDEHEIATVGPHFRQASNFLMPFKLKCQEGGYR
Sbjct: 1  SWLTSSDLFKKALGEHGIICLEDEHEIATVGPHFRQASNFLMPFKLKCQEGGYR 54



>Os08g0542100 Ribosomal protein L7, eukaryotic form family protein
          Length = 248

 Score = 87.4 bits (215), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/49 (81%), Positives = 45/49 (91%), Gaps = 1/49 (2%)

Query: 3   LTSSDLFKKALGEHGIICLED-EHEIATVGPHFRQASNFLMPFKLKCQE 50
           LTS+DL +KALGE+GIICLED  HEIA+VGPHFR+ASNFLMPFKLKC E
Sbjct: 169 LTSNDLIEKALGEYGIICLEDLVHEIASVGPHFREASNFLMPFKLKCPE 217



>Os04g0605900 Similar to 60S ribosomal protein L7-2
          Length = 244

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 41/53 (77%), Gaps = 1/53 (1%)

Query: 3   LTSSDLFKKALGEHGIICLED-EHEIATVGPHFRQASNFLMPFKLKCQEGGYR 54
           LT++ + ++ LG+H IIC+ED  HEI TVGPHF++A+NFL PFKLK   GG +
Sbjct: 165 LTNNKVIEEGLGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLK 217



>Os08g0234000 Similar to 60S ribosomal protein L7-2
          Length = 245

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 40/53 (75%), Gaps = 1/53 (1%)

Query: 3   LTSSDLFKKALGEHGIICLED-EHEIATVGPHFRQASNFLMPFKLKCQEGGYR 54
           L ++ + ++ LG+H IIC+ED  HEI TVGPHF++A+NFL PFKLK   GG +
Sbjct: 166 LQNNKVIEEGLGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLK 218



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.139    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,956,981
Number of extensions: 51431
Number of successful extensions: 59
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 4
Length of query: 54
Length of database: 17,035,801
Length adjustment: 27
Effective length of query: 27
Effective length of database: 15,626,023
Effective search space: 421902621
Effective search space used: 421902621
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)