Os08g0542100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosomal protein L7, eukaryotic form family protein.
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Os08g0542100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosomal protein L7, eukaryotic form family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.95 | 0.481 | 10.4 | 0.185 | 0.0293 | 1.34 | -0.922 | -0.307 | 0.0103 | 7.58 | 7.628 | 10 | 8.98 | 20 |
| 105.01 | 0.477 | 10.4 | 0.211 | 0.0238 | 1.34 | -0.82 | -- | 0.0147 | 8.01 | 7.173 | 9 | 8.98 | 20 |
| 106.19 | 0.48 | 10.4 | 0.187 | 0.139 | 1.43 | -- | 0.183 | 0.0134 | 3.12 | 8.636 | 7 | 8.97 | 20 |
| 106.2 | 0.48 | 10.4 | 0.159 | 0.148 | 1.44 | -- | -- | -0.00179 | 3.26 | 8.681 | 7 | 8.97 | 20.1 |
| 106.98 | 0.482 | 10.4 | 0.215 | -- | 1.35 | -- | 0.164 | 0.0236 | -- | 7.598 | 6 | 8.97 | 20 |
| 143.79 | 0.562 | 10.4 | 0.36 | 0.58 | -- | 0.814 | -- | 0.07 | 17.8 | -- | -- | -- | -- |
| 145.31 | 0.565 | 10.4 | 0.355 | 0.585 | -- | -- | -- | 0.0738 | 17.6 | -- | -- | -- | -- |
| 106.97 | 0.482 | 10.4 | 0.196 | -- | 1.33 | -- | -- | 0.0111 | -- | 7.457 | 6 | 8.97 | 20.1 |
| 106.77 | 0.481 | 10.4 | -- | 0.173 | 1.48 | -- | -- | -0.0326 | 3.06 | 9.744 | 6 | 8.97 | 20.1 |
| 163.11 | 0.597 | 10.4 | 0.336 | -- | -- | -- | -- | 0.0596 | -- | -- | -- | -- | -- |
| 148.64 | 0.57 | 10.4 | -- | 0.579 | -- | -- | -- | 0.0342 | 17.6 | -- | -- | -- | -- |
| 107.84 | 0.484 | 10.4 | -- | -- | 1.34 | -- | -- | -0.00537 | -- | 8.174 | 5 | 8.98 | 20 |
| 166.09 | 0.602 | 10.4 | -- | -- | -- | -- | -- | 0.0223 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.04 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 5 | 108.80 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 7 | 109.88 | temperature | 20.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 38 | 114.67 | temperature | 20.0 | 90 | > th | dose independent | rect. | 19 | 9 |
| 39 | 114.88 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 19 | 9 |
| 42 | 115.07 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 47 | 115.48 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 9 |
| 54 | 116.08 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 56 | 116.23 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 67 | 116.78 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 68 | 116.78 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 20 |
| 72 | 116.94 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 4 |
| 73 | 116.94 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 78 | 117.00 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 79 | 117.01 | wind | 9.0 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 82 | 117.08 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 84 | 117.12 | wind | 7.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 86 | 117.12 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 88 | 117.12 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 89 | 117.12 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 91 | 117.12 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 92 | 117.12 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 93 | 117.12 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 104 | 117.32 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 107 | 117.38 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 108 | 117.38 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 110 | 117.43 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 116 | 117.46 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 118 | 117.49 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 9 | 20 |
| 120 | 117.49 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 9 | 20 |
| 137 | 117.77 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 144 | 118.05 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 9 | 20 |
| 148 | 118.18 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 150 | 118.18 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 151 | 118.18 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 154 | 118.18 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 155 | 118.18 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 156 | 118.18 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 159 | 118.18 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 166 | 118.26 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 167 | 118.34 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 170 | 118.37 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 205 | 118.63 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 215 | 118.79 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 216 | 118.79 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 225 | 118.94 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 238 | 119.11 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 266 | 119.30 | temperature | 20.0 | 90 | > th | dose independent | rect. | 19 | 19 |
| 271 | 119.39 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 14 |
| 298 | 119.58 | humidity | 50.0 | 30 | > th | dose independent | rect. | 9 | 5 |
| 302 | 119.65 | wind | 1.0 | 30 | > th | dose independent | rect. | 9 | 5 |
| 336 | 119.97 | wind | 5.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 338 | 120.00 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 340 | 120.03 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 5 |
| 342 | 120.06 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 5 |
| 344 | 120.06 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 5 |
| 345 | 120.06 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 9 | 5 |
| 346 | 120.06 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 9 | 5 |
| 347 | 120.06 | temperature | 10.0 | 10 | > th | dose independent | rect. | 14 | 19 |
| 348 | 120.06 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 9 | 5 |
| 350 | 120.08 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 17 |
| 361 | 120.15 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 14 | 19 |
| 365 | 120.17 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 9 | 5 |
| 378 | 120.24 | radiation | 40.0 | 10 | < th | dose independent | rect. | 14 | 19 |
| 388 | 120.26 | humidity | 50.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 389 | 120.27 | radiation | 1.0 | 10 | > th | dose independent | rect. | 9 | 5 |
| 398 | 120.35 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 401 | 120.39 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 404 | 120.39 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 423 | 120.43 | humidity | 90.0 | 10 | < th | dose independent | rect. | 9 | 5 |
| 434 | 120.46 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 436 | 120.47 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 438 | 120.49 | radiation | 40.0 | 10 | < th | dose independent | rect. | 12 | 21 |
| 454 | 120.56 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 14 | 19 |
| 455 | 120.56 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 14 | 19 |
| 467 | 120.65 | wind | 9.0 | 30 | < th | dose independent | rect. | 14 | 19 |
| 475 | 120.68 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 5 |
| 479 | 120.68 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 495 | 120.70 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 496 | 120.71 | humidity | 50.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 503 | 120.74 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 513 | 120.81 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 14 |
| 515 | 120.81 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 551 | 120.90 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 565 | 120.99 | humidity | 50.0 | 10 | > th | dose independent | rect. | 14 | 19 |
| 573 | 121.02 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 587 | 121.08 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 1 |
| 588 | 121.08 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 594 | 121.11 | radiation | 1.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 597 | 121.12 | wind | 9.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 600 | 121.13 | temperature | 10.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 601 | 121.13 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 602 | 121.13 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 603 | 121.13 | temperature | 10.0 | 270 | > th | dose independent | rect. | 10 | 23 |
| 606 | 121.15 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 608 | 121.18 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 664 | 121.30 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 694 | 121.38 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 695 | 121.38 | radiation | 20.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 698 | 121.38 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 14 |
| 699 | 121.38 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 731 | 121.51 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 775 | 121.69 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 797 | 121.74 | wind | 1.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 830 | 121.86 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 854 | 121.93 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 18 |
| 870 | 122.00 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 9 | 3 |
| 888 | 122.02 | radiation | 1.0 | 30 | > th | dose independent | rect. | 14 | 19 |
| 912 | 122.08 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 14 |
| 936 | 122.11 | radiation | 1.0 | 90 | < th | dose dependent | sin | 12 | NA |
| 947 | 122.15 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 967 | 122.20 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 14 |
| 989 | 122.27 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 10 |