BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0542100 Os08g0542100|AK058490
(248 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G80750.1 | chr1:30349052-30350434 FORWARD LENGTH=248 236 1e-62
AT2G01250.1 | chr2:132943-134264 REVERSE LENGTH=243 213 6e-56
AT2G44120.2 | chr2:18249227-18250417 REVERSE LENGTH=248 208 2e-54
AT3G13580.3 | chr3:4433809-4435109 FORWARD LENGTH=245 204 4e-53
>AT1G80750.1 | chr1:30349052-30350434 FORWARD LENGTH=248
Length = 247
Score = 236 bits (601), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 129/248 (52%), Positives = 162/248 (65%), Gaps = 2/248 (0%)
Query: 2 MAEEGTQQLPYVRETVLKKRKVNEDWAVKNXXXXXXXXXXXXXXXXXXIKRPEDFVREFR 61
MAEE + L Y+ E VLKKRK ++ A IKRPEDFV EFR
Sbjct: 1 MAEEEAKGLDYIPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVHEFR 60
Query: 62 NKELDFVRMKTRLKVRKLPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGV 121
KE+D +RMK R+K K P + S LVF IRI G D+HP +RIL L+L V TGV
Sbjct: 61 AKEVDMIRMKQRVKRPKSSPP-PVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGV 119
Query: 122 FLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGE 181
F KATD+ ++LL V+P++TYG+PN K+VKDLIYKKG ++ P PLT N++IE+ALGE
Sbjct: 120 FAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGE 179
Query: 182 YGIICLEDLVHEIASVGPHFREASNFLMPFKLKCP-ERRLQMKKKPFKDGGDSGNREDKI 240
+ I+ +EDLV+EIA VG HFRE FL P KL P L KK+ F +GGD+GNREDKI
Sbjct: 180 HKILGIEDLVNEIARVGDHFREVMRFLGPLKLNKPVADVLHRKKQVFSEGGDTGNREDKI 239
Query: 241 NELIEKLN 248
N+LI K+N
Sbjct: 240 NDLISKMN 247
>AT2G01250.1 | chr2:132943-134264 REVERSE LENGTH=243
Length = 242
Score = 213 bits (543), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 154/236 (65%), Gaps = 1/236 (0%)
Query: 13 VRETVLKKRKVNEDWAVKNXXXXXXXXXXXXXXXXXXIKRPEDFVREFRNKELDFVRMKT 72
V E+VLKKRK E+WA++ KR E + +E+ KE + + +K
Sbjct: 8 VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKR 67
Query: 73 RLKVRKLPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGVFLKATDATMKR 132
K++ + +KL+F IRI G + P ++IL+ LRL Q+ GVFLK ATM
Sbjct: 68 EAKLKGGFYVDP-EAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNM 126
Query: 133 LLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLEDLVH 192
L VEP++TYGFPNLK+VK+LIYK+G G L+ + LT N ++E+ALG++GIIC EDL+H
Sbjct: 127 LRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIH 186
Query: 193 EIASVGPHFREASNFLMPFKLKCPERRLQMKKKPFKDGGDSGNREDKINELIEKLN 248
EI +VGPHF+EA+NFL PF+LK P L+ K+ + +GGD+GNRE+ INELI ++N
Sbjct: 187 EILTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRMN 242
>AT2G44120.2 | chr2:18249227-18250417 REVERSE LENGTH=248
Length = 247
Score = 208 bits (530), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/248 (42%), Positives = 157/248 (63%), Gaps = 1/248 (0%)
Query: 1 MMAEEGTQQLPYVRETVLKKRKVNEDWAVKNXXXXXXXXXXXXXXXXXXIKRPEDFVREF 60
M E + V E+VLKK K E+WA+ KR E + +E+
Sbjct: 1 MYVGEMAESKVVVPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEY 60
Query: 61 RNKELDFVRMKTRLKVRKLPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTG 120
K+ + +R+K K++ + +KL+F IRI G + P ++IL+ LRL Q+ G
Sbjct: 61 AEKDNELIRLKREAKLKGGFYVDP-EAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNG 119
Query: 121 VFLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALG 180
VFLK AT+ L VEP++TYG+PNLK+VK+LIYK+G G L+ + LT N ++++ALG
Sbjct: 120 VFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALG 179
Query: 181 EYGIICLEDLVHEIASVGPHFREASNFLMPFKLKCPERRLQMKKKPFKDGGDSGNREDKI 240
++GIIC+EDL+HEI +VGPHF+EA+NFL PF+LK P L+ K+ + +GGD+GNRE+ I
Sbjct: 180 KHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFI 239
Query: 241 NELIEKLN 248
NEL+ ++N
Sbjct: 240 NELVRRMN 247
>AT3G13580.3 | chr3:4433809-4435109 FORWARD LENGTH=245
Length = 244
Score = 204 bits (518), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 155/239 (64%), Gaps = 7/239 (2%)
Query: 13 VRETVLKKRKVNEDWAVKNXXXXXXXXXXXXXXXXXXIKRPEDFVREFRNKELDFVRMKT 72
V E+VLKKRK E+WA+ R + + +E++ KE + +++K
Sbjct: 10 VPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKERELIQLKR 69
Query: 73 RLKVRK---LPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGVFLKATDAT 129
K++ + P +KL+F IRI G + P ++IL+ LRL Q+ GVFLK AT
Sbjct: 70 EAKLKGGFYVDP----EAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKAT 125
Query: 130 MKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLED 189
+ L VEP++TYG+PNLK+VK+LIYK+G G L+ + LT N ++++ LG++GIIC+ED
Sbjct: 126 INMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVED 185
Query: 190 LVHEIASVGPHFREASNFLMPFKLKCPERRLQMKKKPFKDGGDSGNREDKINELIEKLN 248
L+HEI +VGPHF+EA+NFL PF+LK P ++ K+ + +GGD+GNRE+ INEL+ ++N
Sbjct: 186 LIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRMN 244
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.140 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,028,211
Number of extensions: 197601
Number of successful extensions: 418
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 412
Number of HSP's successfully gapped: 4
Length of query: 248
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 152
Effective length of database: 8,474,633
Effective search space: 1288144216
Effective search space used: 1288144216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)