Os08g0542300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L7-2.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0542300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to 60S ribosomal protein L7-2.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.67 | 0.437 | 8.92 | -1.35 | 1.48 | -1.38 | 1.67 | 1.59 | 0.255 | 1.42 | 25.07 | 19 | -- | -- |
| 87.75 | 0.44 | 8.94 | -1.55 | 1.49 | -1.23 | 1.48 | -- | 0.212 | 1.47 | 24.85 | 24 | -- | -- |
| 96.17 | 0.46 | 8.96 | -1.67 | 1.48 | -1.25 | -- | -0.754 | 0.175 | 1.53 | 25.03 | 18 | -- | -- |
| 96.04 | 0.456 | 8.95 | -1.59 | 1.47 | -1.33 | -- | -- | 0.204 | 1.45 | 25 | 18 | -- | -- |
| 182.14 | 0.629 | 8.87 | -1.19 | -- | -2.73 | -- | 1.08 | 0.439 | -- | 24.41 | 10 | -- | -- |
| 110.62 | 0.493 | 8.97 | -1.72 | 1.95 | -- | 1.78 | -- | 0.106 | 1.81 | -- | -- | -- | -- |
| 122.9 | 0.519 | 8.97 | -1.78 | 1.95 | -- | -- | -- | 0.0949 | 1.87 | -- | -- | -- | -- |
| 182.77 | 0.63 | 8.89 | -1.3 | -- | -2.64 | -- | -- | 0.418 | -- | 24.38 | 10 | -- | -- |
| 158.69 | 0.587 | 8.89 | -- | 1.29 | -1.71 | -- | -- | 0.484 | 1.2 | 23.69 | 32 | -- | -- |
| 353.21 | 0.878 | 8.95 | -1.7 | -- | -- | -- | -- | 0.14 | -- | -- | -- | -- | -- |
| 206.48 | 0.672 | 8.93 | -- | 1.92 | -- | -- | -- | 0.293 | 1.84 | -- | -- | -- | -- |
| 227.2 | 0.702 | 8.84 | -- | -- | -2.82 | -- | -- | 0.612 | -- | 23.9 | 11 | -- | -- |
| 429.48 | 0.967 | 8.91 | -- | -- | -- | -- | -- | 0.328 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.45 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 2 | 83.60 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 6 | 84.14 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 7 | 84.20 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 13 |
| 14 | 85.11 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 18 | 85.33 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 21 | 85.38 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 4 | 11 |
| 25 | 85.64 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 27 | 85.71 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 28 | 85.71 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 31 | 85.75 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 7 |
| 33 | 85.78 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 34 | 85.78 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 35 | 85.78 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 36 | 85.79 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 20 |
| 37 | 85.81 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 38 | 85.81 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 9 |
| 42 | 85.81 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 17 |
| 50 | 85.84 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 12 | 2 |
| 51 | 85.85 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 20 |
| 52 | 85.86 | humidity | 60.0 | 14400 | > th | dose independent | sin | 15 | NA |
| 53 | 85.87 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 10 |
| 72 | 85.94 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 16 | 21 |
| 100 | 86.04 | humidity | 60.0 | 14400 | < th | dose independent | sin | 15 | NA |
| 141 | 86.22 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 149 | 86.29 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 152 | 86.32 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 19 | 4 |
| 158 | 86.34 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 14 |
| 159 | 86.34 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 14 |
| 176 | 86.42 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 14 |
| 187 | 86.44 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 15 | 17 |
| 188 | 86.44 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 197 | 86.48 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 19 | 4 |
| 217 | 86.50 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 222 | 86.53 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 240 | 86.56 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 247 | 86.58 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 14 | 4 |
| 250 | 86.58 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 5 | 21 |
| 252 | 86.59 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 271 | 86.60 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 291 | 86.63 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 314 | 86.67 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 320 | 86.67 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 322 | 86.68 | humidity | 70.0 | 14400 | < th | dose dependent | sin | 13 | NA |
| 344 | 86.72 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 347 | 86.72 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 394 | 86.77 | temperature | 30.0 | 720 | < th | dose independent | rect. | 24 | 12 |
| 407 | 86.78 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 408 | 86.78 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 15 | 7 |
| 415 | 86.78 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 12 |
| 434 | 86.80 | temperature | 25.0 | 10 | > th | dose dependent | no | NA | NA |
| 457 | 86.83 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 1 | NA |
| 458 | 86.83 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 1 | NA |
| 465 | 86.84 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 466 | 86.84 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 10 |
| 468 | 86.84 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 469 | 86.84 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 471 | 86.84 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 10 |
| 479 | 86.86 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 1 | NA |
| 495 | 86.89 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 10 |
| 501 | 86.90 | temperature | 25.0 | 720 | > th | dose independent | rect. | 5 | 4 |
| 505 | 86.90 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 535 | 86.95 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 3 | 16 |
| 536 | 86.95 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 16 | 21 |
| 537 | 86.95 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 23 |
| 540 | 86.96 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 569 | 87.01 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 572 | 87.02 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 6 | 17 |
| 590 | 87.03 | humidity | 60.0 | 14400 | > th | dose independent | no | NA | NA |
| 641 | 87.04 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 8 | 13 |
| 650 | 87.04 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 8 | 21 |
| 670 | 87.05 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 23 |
| 706 | 87.09 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 717 | 87.11 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 3 | 18 |
| 755 | 87.13 | humidity | 70.0 | 1440 | > th | dose independent | no | NA | NA |
| 778 | 87.13 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 780 | 87.13 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 787 | 87.14 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 6 | 14 |
| 792 | 87.14 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 19 |
| 868 | 87.18 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 909 | 87.27 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 910 | 87.27 | wind | 5.0 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 979 | 87.37 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |