BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0542300 Os08g0542300|J065019N01
         (54 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44120.2  | chr2:18249227-18250417 REVERSE LENGTH=248           70   3e-13
AT2G01250.1  | chr2:132943-134264 REVERSE LENGTH=243               69   6e-13
AT3G13580.3  | chr3:4433809-4435109 FORWARD LENGTH=245             67   2e-12
AT1G80750.1  | chr1:30349052-30350434 FORWARD LENGTH=248           47   2e-06

>AT2G44120.2 | chr2:18249227-18250417 REVERSE LENGTH=248
          Length = 247

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 41/53 (77%), Gaps = 1/53 (1%)

Query: 3   LTSSDLFKKALGEHGIICLEDE-HEIATVGPHFRQASNFLMPFKLKCQEGGYR 54
           LT + +  +ALG+HGIIC+ED  HEI TVGPHF++A+NFL PF+LK   GG +
Sbjct: 168 LTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLK 220



>AT2G01250.1 | chr2:132943-134264 REVERSE LENGTH=243
          Length = 242

 Score = 68.6 bits (166), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 41/53 (77%), Gaps = 1/53 (1%)

Query: 3   LTSSDLFKKALGEHGIICLEDE-HEIATVGPHFRQASNFLMPFKLKCQEGGYR 54
           LT + + ++ALG+HGIIC ED  HEI TVGPHF++A+NFL PF+LK   GG +
Sbjct: 163 LTDNSIVEQALGKHGIICTEDLIHEILTVGPHFKEANNFLWPFQLKAPLGGLK 215



>AT3G13580.3 | chr3:4433809-4435109 FORWARD LENGTH=245
          Length = 244

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 40/53 (75%), Gaps = 1/53 (1%)

Query: 3   LTSSDLFKKALGEHGIICLEDE-HEIATVGPHFRQASNFLMPFKLKCQEGGYR 54
           LT + +  + LG+HGIIC+ED  HEI TVGPHF++A+NFL PF+LK   GG +
Sbjct: 165 LTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMK 217



>AT1G80750.1 | chr1:30349052-30350434 FORWARD LENGTH=248
          Length = 247

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 1/45 (2%)

Query: 3   LTSSDLFKKALGEHGIICLED-EHEIATVGPHFRQASNFLMPFKL 46
           LT +++ ++ALGEH I+ +ED  +EIA VG HFR+   FL P KL
Sbjct: 167 LTDNNIIEQALGEHKILGIEDLVNEIARVGDHFREVMRFLGPLKL 211



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.139    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,263,706
Number of extensions: 34422
Number of successful extensions: 61
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 4
Length of query: 54
Length of database: 11,106,569
Length adjustment: 27
Effective length of query: 27
Effective length of database: 10,366,337
Effective search space: 279891099
Effective search space used: 279891099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 105 (45.1 bits)