BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0537800 Os08g0537800|AK059388
         (216 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0537800  Ovarian tumour, otubain domain containing protein   447   e-126
Os04g0652600  Conserved hypothetical protein                       88   5e-18
Os02g0517600  Conserved hypothetical protein                       73   1e-13

>Os08g0537800 Ovarian tumour, otubain domain containing protein
          Length = 216

 Score =  447 bits (1150), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/216 (100%), Positives = 216/216 (100%)

Query: 1   YDALRRTRGDGNCFYRSFMFSYLEHILETQDKAEVERILKKIEQCKKTLADLGYIEFTFE 60
           YDALRRTRGDGNCFYRSFMFSYLEHILETQDKAEVERILKKIEQCKKTLADLGYIEFTFE
Sbjct: 1   YDALRRTRGDGNCFYRSFMFSYLEHILETQDKAEVERILKKIEQCKKTLADLGYIEFTFE 60

Query: 61  DFFSIFIDQLESVLQGHESSIGAEELLERTRDQMVSDYVVMFFRFVTSGEIQRRAEFFEP 120
           DFFSIFIDQLESVLQGHESSIGAEELLERTRDQMVSDYVVMFFRFVTSGEIQRRAEFFEP
Sbjct: 61  DFFSIFIDQLESVLQGHESSIGAEELLERTRDQMVSDYVVMFFRFVTSGEIQRRAEFFEP 120

Query: 121 FISGLTNSTVVQFCKASVEPMGEESDHVHIIALSDALGVPIRVMYLDRSSCDAGNISVNH 180
           FISGLTNSTVVQFCKASVEPMGEESDHVHIIALSDALGVPIRVMYLDRSSCDAGNISVNH
Sbjct: 121 FISGLTNSTVVQFCKASVEPMGEESDHVHIIALSDALGVPIRVMYLDRSSCDAGNISVNH 180

Query: 181 HDFSPEANSSDGAAAAEKPYITLLYRPGHYDILYPK 216
           HDFSPEANSSDGAAAAEKPYITLLYRPGHYDILYPK
Sbjct: 181 HDFSPEANSSDGAAAAEKPYITLLYRPGHYDILYPK 216



>Os04g0652600 Conserved hypothetical protein
          Length = 548

 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 7/197 (3%)

Query: 1   YDALRRTRGDGNCFYRSFMFSYLEHILETQDKAE----VERILKKIEQCKKTLADLGYIE 56
           YD  R    DG+CFYR+F+FSY+E I+  QD  E    V RI ++I + K+  A  G   
Sbjct: 263 YDFFRPVDRDGSCFYRAFIFSYMERIVAMQDDLERIIEVSRIGERIGKYKQAYARFGSFG 322

Query: 57  FTFEDFFSIFIDQLESVLQGHESSIGAEELLERTRDQMVSDYVVMFFRFVTSGEIQRRAE 116
              E+F    +   E ++   E  +  E+L +   +  ++   + F RF+T  EI    +
Sbjct: 323 IPQEEFLKA-LSAFEQLINLIEKGVAVEQLYQ-IDETDITKNSLRFLRFLTEIEICTHED 380

Query: 117 FFEPFISGLTNSTVVQFCKASVEPMGEESDHVHIIALSDALGVPIRVMYLDRSSCDAGNI 176
            ++ F+     S+V +FC+  V P   E+ +  + AL +ALG+P+ V  LD +S +    
Sbjct: 381 HYKGFLLTADYSSVFEFCQVEVRPENAEASNEQMKALVEALGIPVLVENLDTTS-ETDTP 439

Query: 177 SVNHHDFSPEANSSDGA 193
            +N H   P   S +G 
Sbjct: 440 ILNQHFIYPRPESEEGT 456



>Os02g0517600 Conserved hypothetical protein
          Length = 496

 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 82/169 (48%), Gaps = 6/169 (3%)

Query: 1   YDALRRTRGDGNCFYRSFMFSYLEHILETQDKAEVERILKKIEQCKKTLADLGYI-EFT- 58
           Y  LR  R DG  FYRSFMFSYLE + +  D  E +R+L  + +       L +  EF+ 
Sbjct: 177 YSELRPVRRDGEGFYRSFMFSYLEQVADRVDTREEDRLLDAVRKLATRAEHLQWASEFSR 236

Query: 59  -FEDFFSIF--IDQLESVLQGHESSIGAEELLERTRDQMVSDYVVMFFRFVTSGEIQRRA 115
             E F ++   I +L+ + +   S+I  E LLE       +D +  F R   +  I    
Sbjct: 237 RCEAFETLIEKIKKLKCMSEQPTSAIRGELLLELFSSYDTTDDIFAFLRLAAAIWICTHK 296

Query: 116 EFFEPFISGLTNSTVVQ-FCKASVEPMGEESDHVHIIALSDALGVPIRV 163
             +   ++GL     ++ +C   V P    +DHV + ALS ALGV +RV
Sbjct: 297 GLYGQRVTGLGEGVSLEDWCSTQVIPPRVHADHVTMSALSRALGVAVRV 345



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.138    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,792,640
Number of extensions: 250990
Number of successful extensions: 752
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 751
Number of HSP's successfully gapped: 3
Length of query: 216
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 119
Effective length of database: 11,971,043
Effective search space: 1424554117
Effective search space used: 1424554117
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)