BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0532300 Os08g0532300|AK119730
         (122 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0532300  Similar to Nuclear transport factor 2 (NTF-2) ...   254   1e-68
Os01g0788200  Nuclear transport factor 2 domain containing p...   146   4e-36

>Os08g0532300 Similar to Nuclear transport factor 2 (NTF-2) (Allergen Cla h ?)
          Length = 122

 Score =  254 bits (648), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 122/122 (100%), Positives = 122/122 (100%)

Query: 1   MDADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQC 60
           MDADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQC
Sbjct: 1   MDADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQC 60

Query: 61  HHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPAGGNFYVQNDMFRLN 120
           HHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPAGGNFYVQNDMFRLN
Sbjct: 61  HHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPAGGNFYVQNDMFRLN 120

Query: 121 YG 122
           YG
Sbjct: 121 YG 122



>Os01g0788200 Nuclear transport factor 2 domain containing protein
          Length = 146

 Score =  146 bits (368), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 74/122 (60%), Positives = 90/122 (73%), Gaps = 2/122 (1%)

Query: 3   ADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQCHH 62
            D VA+AFVE+YY+TFDTNR AL +LY   SML+FEG    GA  I  KL  LPF QC H
Sbjct: 25  CDVVARAFVEYYYQTFDTNRAALAALYGQTSMLSFEGHMVAGAEEIGRKLLGLPFEQCRH 84

Query: 63  DINTVDCQPSGP-QGGMLVFVSGSLRTGPDEHPLKFSQMFQLLP-AGGNFYVQNDMFRLN 120
            + TVDCQP+    GG+LVFVSG+L+   +EH L+FSQMFQL+P   G+F+VQND+FRLN
Sbjct: 85  AVCTVDCQPTPSFPGGILVFVSGNLQLAGEEHQLRFSQMFQLVPNEQGSFFVQNDIFRLN 144

Query: 121 YG 122
           YG
Sbjct: 145 YG 146



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,503,595
Number of extensions: 179343
Number of successful extensions: 245
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 2
Length of query: 122
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 34
Effective length of database: 12,440,969
Effective search space: 422992946
Effective search space used: 422992946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)