Os01g0788200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nuclear transport factor 2 domain containing protein.
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Os01g0788200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nuclear transport factor 2 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 229.86 | 0.712 | 10.9 | -2.95 | 2.67 | -2.6 | 0.77 | -1.1 | -0.654 | 10.7 | 11.25 | 205 | 20.8 | -- |
| 231.13 | 0.708 | 10.9 | -2.93 | 2.66 | -2.61 | 0.706 | -- | -0.648 | 10.8 | 10.52 | 204 | 20.5 | -- |
| 232 | 0.709 | 10.9 | -2.91 | 2.64 | -2.57 | -- | -0.895 | -0.653 | 10.8 | 11.08 | 201 | 20.6 | -- |
| 232.98 | 0.711 | 10.9 | -2.9 | 2.64 | -2.57 | -- | -- | -0.654 | 10.9 | 10.82 | 201 | 20.4 | -- |
| 376.49 | 0.904 | 11 | -2.84 | -- | -2.33 | -- | -1.07 | -0.646 | -- | 14.82 | 160 | 5.7 | -- |
| 334.34 | 0.857 | 10.9 | -2.9 | 2.58 | -- | 0.951 | -- | -0.624 | 12.7 | -- | -- | -- | -- |
| 338.19 | 0.861 | 10.9 | -2.87 | 2.58 | -- | -- | -- | -0.619 | 12.7 | -- | -- | -- | -- |
| 341.21 | 0.86 | 10.9 | -2.9 | -- | -2.53 | -- | -- | -0.595 | -- | 161.4 | 9 | 5.33 | -- |
| 449.43 | 0.987 | 10.8 | -- | 2.52 | -2.47 | -- | -- | -0.369 | 11.1 | 10.01 | 186 | 20.3 | -- |
| 753.85 | 1.28 | 10.9 | -2.96 | -- | -- | -- | -- | -0.665 | -- | -- | -- | -- | -- |
| 555.06 | 1.1 | 10.8 | -- | 2.62 | -- | -- | -- | -0.3 | 12.7 | -- | -- | -- | -- |
| 555.26 | 1.1 | 10.9 | -- | -- | -2.61 | -- | -- | -0.296 | -- | 2525 | 6 | 5.33 | -- |
| 985.01 | 1.46 | 10.9 | -- | -- | -- | -- | -- | -0.336 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 227.48 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 2 | 13 |
| 6 | 229.85 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 12 |
| 7 | 230.10 | humidity | 80.0 | 30 | > th | dose independent | rect. | 5 | 13 |
| 9 | 230.34 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 12 | 230.77 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 5 | 13 |
| 19 | 232.74 | humidity | 80.0 | 30 | > th | dose independent | rect. | 5 | 11 |
| 25 | 233.12 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 32 | 234.72 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 2 | 6 |
| 40 | 235.21 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 50 | 236.80 | humidity | 80.0 | 30 | > th | dose independent | rect. | 5 | 9 |
| 72 | 238.93 | humidity | 80.0 | 10 | > th | dose independent | sin | 1 | NA |
| 73 | 238.97 | humidity | 80.0 | 10 | < th | dose independent | rect. | 8 | 8 |
| 74 | 239.01 | radiation | 10.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 83 | 239.26 | humidity | 70.0 | 30 | > th | dose dependent | sin | 2 | NA |
| 94 | 240.00 | humidity | 80.0 | 10 | < th | dose independent | sin | 1 | NA |
| 106 | 240.38 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 108 | 240.38 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 114 | 240.82 | radiation | 10.0 | 90 | > th | dose independent | rect. | 7 | 8 |
| 120 | 241.19 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 121 | 241.27 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 127 | 241.56 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 128 | 241.56 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 130 | 241.56 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 131 | 241.56 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 134 | 241.56 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 139 | 241.56 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 150 | 242.07 | radiation | 1.0 | 270 | < th | dose independent | sin | 2 | NA |
| 151 | 242.09 | radiation | 1.0 | 270 | > th | dose independent | sin | 2 | NA |
| 178 | 243.23 | humidity | 80.0 | 30 | > th | dose independent | rect. | 5 | 7 |
| 198 | 243.93 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 205 | 244.14 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 209 | 244.25 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 19 |
| 210 | 244.25 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 215 | 244.42 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 235 | 245.06 | humidity | 70.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 239 | 245.17 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 241 | 245.20 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 242 | 245.20 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 253 | 245.53 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 254 | 245.53 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 256 | 245.53 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 257 | 245.53 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 259 | 245.53 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 277 | 246.00 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 289 | 246.30 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 319 | 246.88 | humidity | 80.0 | 10 | < th | dose independent | rect. | 2 | 14 |
| 327 | 247.04 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 5 | 7 |
| 331 | 247.14 | radiation | 10.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 334 | 247.17 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 19 |
| 369 | 247.71 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 5 |
| 378 | 247.88 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 396 | 248.29 | radiation | 10.0 | 10 | < th | dose independent | rect. | 5 | 18 |
| 402 | 248.38 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 5 |
| 403 | 248.38 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 417 | 248.69 | radiation | 10.0 | 90 | < th | dose independent | rect. | 4 | 18 |
| 427 | 248.90 | humidity | 80.0 | 10 | < th | dose independent | rect. | 24 | 16 |
| 508 | 250.43 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 574 | 251.63 | humidity | 80.0 | 90 | > th | dose independent | rect. | 4 | 5 |
| 590 | 251.90 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 604 | 252.04 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 4 | 18 |
| 605 | 252.05 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 637 | 252.60 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 650 | 252.77 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 698 | 253.15 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 5 |
| 796 | 254.40 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 812 | 254.66 | wind | 7.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 814 | 254.66 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 816 | 254.66 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 817 | 254.66 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 819 | 254.66 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 834 | 254.76 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 853 | 254.85 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 872 | 254.99 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 2 |
| 873 | 254.99 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 887 | 255.11 | radiation | 20.0 | 90 | < th | dose independent | rect. | 13 | 19 |
| 902 | 255.24 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 21 |