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Os08g0532300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nuclear transport factor 2 (NTF-2) (Allergen Cla h ?).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.5 (0.0139) R2 : 0.647
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.43 (0.0563) R2dE : 0.558 R2E : 0.622
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.143 (0.0307) R2dN8 : 0.0251 R2N8 : 0.0893
σ : 0.258
deviance : 30.68
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 27.95
memory length : 26
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.2 0.24 14.5 0.269 0.13 -1.28 -0.00927 0.551 0.19 8.56 28.39 29 -- --
26.61 0.24 14.5 0.369 0.128 -1.28 -0.114 -- 0.214 9 28.09 30 -- --
26.2 0.238 14.5 0.268 0.13 -1.28 -- 0.554 0.19 8.57 28.38 28 -- --
26.65 0.24 14.5 0.364 0.128 -1.29 -- -- 0.212 8.65 28.14 28 -- --
27.05 0.244 14.5 0.279 -- -1.29 -- 0.531 0.197 -- 28.38 28 -- --
50.1 0.332 14.4 0.682 0.437 -- -0.0961 -- 0.49 13.1 -- -- -- --
50.14 0.332 14.4 0.679 0.437 -- -- -- 0.49 13.1 -- -- -- --
27.5 0.245 14.5 0.368 -- -1.3 -- -- 0.216 -- 28.14 28 -- --
29.73 0.254 14.5 -- 0.136 -1.45 -- -- 0.142 7.09 28.19 31 -- --
61.97 0.368 14.4 0.662 -- -- -- -- 0.481 -- -- -- -- --
62.29 0.369 14.4 -- 0.426 -- -- -- 0.414 13.1 -- -- -- --
30.68 0.258 14.5 -- -- -1.43 -- -- 0.143 -- 27.95 26 -- --
73.54 0.4 14.4 -- -- -- -- -- 0.408 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.75 temperature 30 30 < th dose dependent rect. 21 23
2 25.79 temperature 30 90 < th dose dependent rect. 11 23
3 25.80 temperature 30 10 < th dose dependent rect. 1 23
7 26.20 temperature 30 30 < th dose dependent rect. 9 23
8 26.20 temperature 30 10 < th dose dependent rect. 13 23
14 26.71 temperature 30 30 < th dose dependent no NA NA
15 26.72 temperature 30 10 < th dose dependent rect. 11 23
16 26.73 temperature 30 30 < th dose dependent rect. 15 23
20 26.83 temperature 30 30 < th dose dependent rect. 17 23
23 27.02 temperature 15 90 > th dose dependent rect. 6 23
28 27.55 temperature 10 270 > th dose dependent rect. 4 22
30 27.59 temperature 30 10 < th dose dependent rect. 23 23
35 27.86 temperature 30 10 < th dose dependent rect. 3 23
37 27.91 temperature 10 10 > th dose dependent no NA NA
45 28.07 temperature 30 90 < th dose dependent rect. 15 20
62 28.39 temperature 10 270 > th dose dependent rect. 16 23
63 28.42 temperature 30 30 < th dose dependent rect. 19 23
75 28.84 temperature 15 90 > th dose dependent rect. 19 23
78 28.86 temperature 20 10 > th dose dependent rect. 7 22
125 29.48 temperature 30 10 < th dose dependent rect. 7 23
137 29.57 temperature 30 10 < th dose dependent rect. 14 18
172 29.73 temperature 30 10 < th dose dependent rect. 5 23
338 30.76 temperature 25 4320 < th dose dependent rect. 20 1
365 30.91 temperature 20 10 > th dose dependent rect. 4 23
522 31.51 temperature 20 10 > th dose dependent rect. 23 23
544 31.58 temperature 10 4320 > th dose dependent rect. 20 2
552 31.59 temperature 10 4320 > th dose dependent rect. 20 4
593 31.70 temperature 20 10 > th dose dependent rect. 11 23
600 31.72 temperature 25 4320 < th dose dependent sin 16 NA
639 31.79 temperature 10 4320 > th dose dependent rect. 23 1
872 32.14 temperature 20 10 > th dose dependent rect. 16 23
973 32.24 temperature 10 90 > th dose dependent sin 8 NA