BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0532300 Os08g0532300|AK119730
(122 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G27310.1 | chr1:9484615-9485790 REVERSE LENGTH=123 180 1e-46
AT1G27970.2 | chr1:9746921-9748306 FORWARD LENGTH=135 163 2e-41
AT1G11570.2 | chr1:3883280-3883956 FORWARD LENGTH=133 140 2e-34
AT5G60980.2 | chr5:24543988-24546027 FORWARD LENGTH=461 60 4e-10
AT3G25150.2 | chr3:9157161-9160052 REVERSE LENGTH=588 52 7e-08
AT5G48650.1 | chr5:19727279-19729533 FORWARD LENGTH=459 49 6e-07
AT1G13730.1 | chr1:4710519-4712332 FORWARD LENGTH=429 47 2e-06
>AT1G27310.1 | chr1:9484615-9485790 REVERSE LENGTH=123
Length = 122
Score = 180 bits (457), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 85/122 (69%), Positives = 96/122 (78%)
Query: 1 MDADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQC 60
MD DAVAKAFVEHYY TFD NRP LVSLYQ+GSMLTFEGQ+ G+ I KL LPF QC
Sbjct: 1 MDPDAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQC 60
Query: 61 HHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPAGGNFYVQNDMFRLN 120
H+I TVDCQPSGP GGMLVFVSG+L+ ++H LKFSQMF L+ GN+YV ND+FRLN
Sbjct: 61 KHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLISNQGNYYVFNDIFRLN 120
Query: 121 YG 122
Y
Sbjct: 121 YA 122
>AT1G27970.2 | chr1:9746921-9748306 FORWARD LENGTH=135
Length = 134
Score = 163 bits (412), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/118 (66%), Positives = 90/118 (76%), Gaps = 1/118 (0%)
Query: 1 MDADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQC 60
MD DAV+KAFVEHYY TFDTNR L LYQ+ SMLTFEGQ+ G +I KL SLPF QC
Sbjct: 4 MDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQC 63
Query: 61 HHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPA-GGNFYVQNDMF 117
H I+TVDCQPSGP GMLVFVSG+L+ +EH LKFSQMF L+P G+FYV ND+F
Sbjct: 64 KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIF 121
>AT1G11570.2 | chr1:3883280-3883956 FORWARD LENGTH=133
Length = 132
Score = 140 bits (352), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/123 (57%), Positives = 87/123 (70%), Gaps = 4/123 (3%)
Query: 4 DAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQCHHD 63
+ VA AFV HYY FD +R +L SLY S+LTFEGQ G I+ KL LPF QCHH
Sbjct: 10 EEVASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFDQCHHL 69
Query: 64 INTVDCQPS---GPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPA-GGNFYVQNDMFRL 119
I+TVD QPS G GG+LVFVSGS++ ++HPL+FSQ F L+P G+F+VQN+MFRL
Sbjct: 70 ISTVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQTFHLIPVLQGSFFVQNEMFRL 129
Query: 120 NYG 122
NYG
Sbjct: 130 NYG 132
>AT5G60980.2 | chr5:24543988-24546027 FORWARD LENGTH=461
Length = 460
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 47/123 (38%), Positives = 60/123 (48%), Gaps = 9/123 (7%)
Query: 3 ADAVAKAFVEHYYRTFDTNRPALV-SLYQDGSMLT-----FEGQQFLGAAAIAGKLGSLP 56
A+ V +AFVE YY + P LV YQD S LT AI K+ SL
Sbjct: 12 AEVVGRAFVEQYYHILHQS-PGLVHRFYQDSSFLTRPDVTGAVTTVTTMQAINDKILSLK 70
Query: 57 FAQCHHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPAGGNFYVQNDM 116
+ +I T D Q S +G ++V V+G L TG D KFSQ F L P ++V ND+
Sbjct: 71 YEDYTAEIETADAQESHERG-VIVLVTGRL-TGNDNVRKKFSQSFFLAPQDKGYFVLNDV 128
Query: 117 FRL 119
FR
Sbjct: 129 FRF 131
>AT3G25150.2 | chr3:9157161-9160052 REVERSE LENGTH=588
Length = 587
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Query: 4 DAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAA-----AIAGKLGSLPFA 58
D V AFV YY + + YQ+ S L + L + AI K+ +L +
Sbjct: 116 DMVGNAFVPQYYHILHQSPEHVHRFYQEISKLGRPEENGLMSITSTLQAIDKKIMALGYG 175
Query: 59 QCHHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPAGGNFYVQNDMFR 118
+I TVD Q S GG +V V+G L TG D FSQ F L P ++V NDMFR
Sbjct: 176 VISAEIATVDTQESH-GGGYIVLVTGYL-TGKDSVRRTFSQTFFLAPQETGYFVLNDMFR 233
Query: 119 L 119
Sbjct: 234 F 234
>AT5G48650.1 | chr5:19727279-19729533 FORWARD LENGTH=459
Length = 458
Score = 48.9 bits (115), Expect = 6e-07, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 56/125 (44%), Gaps = 8/125 (6%)
Query: 1 MDADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQ-----FLGAAAIAGKLGSL 55
+D V AFV YY F L YQ+ S + GQ F I+ +L L
Sbjct: 11 VDPLTVGSAFVNQYYYIFCNMPEHLPRFYQEISRVGRVGQDGVMRDFSTFQGISEELKRL 70
Query: 56 PFAQCHH-DINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPAGGNFYVQN 114
+ C+ +I + D Q S GG L+FV+G T + KF+Q F L P F+V N
Sbjct: 71 TYGDCNSAEITSYDTQESH-NGGFLLFVTGYF-TLNERSRRKFTQTFFLAPQEKGFFVLN 128
Query: 115 DMFRL 119
D+ R
Sbjct: 129 DILRF 133
>AT1G13730.1 | chr1:4710519-4712332 FORWARD LENGTH=429
Length = 428
Score = 47.0 bits (110), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 1 MDADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQ-----QFLGAAAIAGKLGSL 55
+D + + +FVE YY + + Y D S+L G AI ++ S
Sbjct: 10 VDPNTIGNSFVEKYYNLLYKSPSQVHQFYLDDSVLGRPGSDGEMVSVKSLKAINEQIMSF 69
Query: 56 PFAQCHHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPAGGNFYVQND 115
+ I T D Q S G++ V+G L T + ++FSQ F L+P G+++V ND
Sbjct: 70 DYEISKIQILTADSQAS-YMNGVVTLVTG-LLTVKEGQRMRFSQSFFLVPLNGSYFVLND 127
Query: 116 MFR 118
+FR
Sbjct: 128 VFR 130
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.139 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,703,360
Number of extensions: 103450
Number of successful extensions: 183
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 7
Length of query: 122
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 36
Effective length of database: 8,748,793
Effective search space: 314956548
Effective search space used: 314956548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 105 (45.1 bits)