BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0528800 Os08g0528800|AK122011
(538 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0528800 Peptidase, trypsin-like serine and cysteine do... 1001 0.0
Os01g0917200 Conserved hypothetical protein 374 e-104
>Os08g0528800 Peptidase, trypsin-like serine and cysteine domain containing
protein
Length = 538
Score = 1001 bits (2588), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/538 (91%), Positives = 492/538 (91%)
Query: 1 MGVLGDGSGWCFCSGGAKLERIKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLIHRALL 60
MGVLGDGSGWCFCSGGAKLERIKN FLIHRALL
Sbjct: 1 MGVLGDGSGWCFCSGGAKLERIKNSVLAAKGAAVAAVSFPAGGGGGGRGGSGFLIHRALL 60
Query: 61 LTTHGTIPSXXXXXXXEVRLSHGRLPARLVPQRFFITSPILDLTIVGLDVVNDELNSHGQ 120
LTTHGTIPS EVRLSHGRLPARLVPQRFFITSPILDLTIVGLDVVNDELNSHGQ
Sbjct: 61 LTTHGTIPSAAAAAAAEVRLSHGRLPARLVPQRFFITSPILDLTIVGLDVVNDELNSHGQ 120
Query: 121 QPHFLKTCLNPSLDLGSTVLLLGHTKRKDLTIGEGKVIITTDNLIKFSTDEVAWYPGSAG 180
QPHFLKTCLNPSLDLGSTVLLLGHTKRKDLTIGEGKVIITTDNLIKFSTDEVAWYPGSAG
Sbjct: 121 QPHFLKTCLNPSLDLGSTVLLLGHTKRKDLTIGEGKVIITTDNLIKFSTDEVAWYPGSAG 180
Query: 181 FDMHGNLAFMVCDPMKLAPSTPTGYXXXXXXXXXXXKKDVPTQFGMPIPAVCGWLKQHWN 240
FDMHGNLAFMVCDPMKLAPSTPTGY KKDVPTQFGMPIPAVCGWLKQHWN
Sbjct: 181 FDMHGNLAFMVCDPMKLAPSTPTGYASASSAALLSAKKDVPTQFGMPIPAVCGWLKQHWN 240
Query: 241 GNLEDVSKPMMPPARLISTGQRSECSSVGRLNYIKTMEREGGDGMSSSQIPPRLTQHHGS 300
GNLEDVSKPMMPPARLISTGQRSECSSVGRLNYIKTMEREGGDGMSSSQIPPRLTQHHGS
Sbjct: 241 GNLEDVSKPMMPPARLISTGQRSECSSVGRLNYIKTMEREGGDGMSSSQIPPRLTQHHGS 300
Query: 301 CSSASAKISCGENDSVDSHSIHEQQDLTSQMHESKIEQSASLMDNNFPPGHPRSIRLPLP 360
CSSASAKISCGENDSVDSHSIHEQQDLTSQMHESKIEQSASLMDNNFPPGHPRSIRLPLP
Sbjct: 301 CSSASAKISCGENDSVDSHSIHEQQDLTSQMHESKIEQSASLMDNNFPPGHPRSIRLPLP 360
Query: 361 LKHMMSHENKIKPNPSFSHEAQLANVRINCGTLHNVAYQENCWSEAQSSSSPPDISELGD 420
LKHMMSHENKIKPNPSFSHEAQLANVRINCGTLHNVAYQENCWSEAQSSSSPPDISELGD
Sbjct: 361 LKHMMSHENKIKPNPSFSHEAQLANVRINCGTLHNVAYQENCWSEAQSSSSPPDISELGD 420
Query: 421 ERGGFSSGEETMYSAETRESRNIPSPKEKNPKMVGRSQSFVNHSKWDSPKSVESSKGAPS 480
ERGGFSSGEETMYSAETRESRNIPSPKEKNPKMVGRSQSFVNHSKWDSPKSVESSKGAPS
Sbjct: 421 ERGGFSSGEETMYSAETRESRNIPSPKEKNPKMVGRSQSFVNHSKWDSPKSVESSKGAPS 480
Query: 481 KSHTFIPLRKPHLQAAAISQKSQDFFSPTVSSSMKKRNLSQIPMKPRQSAQVTSKWII 538
KSHTFIPLRKPHLQAAAISQKSQDFFSPTVSSSMKKRNLSQIPMKPRQSAQVTSKWII
Sbjct: 481 KSHTFIPLRKPHLQAAAISQKSQDFFSPTVSSSMKKRNLSQIPMKPRQSAQVTSKWII 538
>Os01g0917200 Conserved hypothetical protein
Length = 469
Score = 374 bits (961), Expect = e-104, Method: Compositional matrix adjust.
Identities = 229/467 (49%), Positives = 282/467 (60%), Gaps = 25/467 (5%)
Query: 93 RFFITSPILDLTIVGLDVVNDELNSHGQQPHFLKTCLNPSLDLGSTVLLLGHTKRKDLTI 152
RFFITS ILDLTIVGLD +E QQPH+LKTC PSLD GS V LLGHT +K+L I
Sbjct: 7 RFFITSSILDLTIVGLDPAENETTLQAQQPHYLKTCCKPSLDHGSVVYLLGHTGKKELVI 66
Query: 153 GEGKVIITTDNLIKFSTDEVAWYPGSAGFDMHGNLAFMVCDPMKLAPSTPTGYXXXXXXX 212
GEGKV+I TDNL+K STD V W PGSAGFD GNLAFM+CDPMKLA S T
Sbjct: 67 GEGKVVIGTDNLLKLSTDGVTWCPGSAGFDAQGNLAFMICDPMKLASSPTTRSSSTSSSS 126
Query: 213 XXXXKKDVPTQFGMPIPAVCGWLKQHWNGNLEDVSKPMMPPARLISTGQRSECSSVGRLN 272
KKD P QFG+PI VC WL QHW GNL++VSKP +P RL+S+ +S R +
Sbjct: 127 SHSSKKDHPMQFGVPISVVCDWLYQHWQGNLDEVSKPKLPLVRLMSSRSDHSSTSFTRRH 186
Query: 273 YIKTMEREGGDGMSSSQIPPRLTQHHGSCSSASAKISCGENDSVDSHSIHEQQDLTSQMH 332
K + E D SSQ+ + S +SA+A+IS N VD + +EQ T +++
Sbjct: 187 VFKPADDENDDTSVSSQVTSKPKHQQASGNSANARISHDANPLVDLRANNEQGVSTPEIY 246
Query: 333 ES---------KIEQSASLMDNNFPPGHPRSIRLPLPLKHMMSHENKI---KPNPSFSHE 380
ES K S L+D NFPP P++I LPLPLK M+S EN KP
Sbjct: 247 ESPRQSSCQGQKDAGSVQLLDINFPPSAPKTIFLPLPLKQMLSDENNADTSKPRNQSRDN 306
Query: 381 AQLANV--RINCGTLHN----VAYQENCWSEAQSSSSPPDISELGDERGGFSSGEETMYS 434
+ + NC L Q++C SE QSSSSP ++ E +E FSS EETMYS
Sbjct: 307 GFPSGIIWHRNCEALSRDPPVAPLQDDCSSEGQSSSSPVELLEYRNE-DHFSSEEETMYS 365
Query: 435 AETRESRNIPSPKEKNPKMVGRSQSFVNHSKWDSPKSVESSKGAPSKSHTFIPLRKPHLQ 494
AET ESRNIPSP+EK+ VGRSQS V + +W SP+ G K HT +P+RK H Q
Sbjct: 366 AETMESRNIPSPREKH---VGRSQSCVTYRRWSSPRMSTIQNGTLRKQHTLVPVRKSHSQ 422
Query: 495 AAAISQKSQDFFSPTVSSSMKKRN--LSQIPMKPRQS-AQVTSKWII 538
++ Q+S D+ SPTVSS+MKKRN Q+P KPR+S AQ + KW+
Sbjct: 423 NTSLPQRSHDYLSPTVSSAMKKRNSMEQQLPTKPRRSIAQTSPKWMF 469
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.130 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,119,206
Number of extensions: 813252
Number of successful extensions: 2293
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2288
Number of HSP's successfully gapped: 2
Length of query: 538
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 432
Effective length of database: 11,501,117
Effective search space: 4968482544
Effective search space used: 4968482544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 158 (65.5 bits)