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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0528800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase, trypsin-like serine and cysteine domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.08 (0.0303) R2 : 0.23
β1 : 1.22 (0.111) R2dD : 0.211 R2D : 0.149
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.388 (0.0647) R2dN8 : 0.0813 R2N8 : 0.0191
σ : 0.569
deviance : 148.14
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
143.2 0.562 4.13 1.21 0.101 0.153 -0.49 3.2 0.336 18.2 6.486 1651 -- --
144.63 0.56 4.09 1.18 0.125 -0.404 -0.241 -- 0.347 16.9 8.2 2707 -- --
143.62 0.558 4.13 1.21 0.1 0.13 -- 2.99 0.338 17 6.491 1584 -- --
144.68 0.56 4.09 1.13 0.102 -0.403 -- -- 0.343 16.4 8.136 2707 -- --
144.26 0.559 4.13 1.22 -- 0.18 -- 3.21 0.337 -- 6.478 1583 -- --
147.22 0.569 4.08 1.22 0.113 -- -0.334 -- 0.392 17.1 -- -- -- --
147.42 0.569 4.08 1.22 0.114 -- -- -- 0.391 15.9 -- -- -- --
145.28 0.561 4.09 1.13 -- -0.392 -- -- 0.334 -- 7.797 2719 -- --
167.22 0.602 4.13 -- 0.0641 -0.81 -- -- 0.361 15.3 7.089 6520 -- --
148.14 0.569 4.08 1.22 -- -- -- -- 0.388 -- -- -- -- --
186.89 0.639 4.11 -- 0.0906 -- -- -- 0.255 16 -- -- -- --
165.71 0.6 4.06 -- -- -0.891 -- -- 0.475 -- 7.556 6530 -- --
187.34 0.639 4.11 -- -- -- -- -- 0.253 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 138.63 radiation 20.0 90 > th dose independent rect. 8 1
2 138.87 radiation 10.0 90 > th dose dependent rect. 8 1
4 139.45 humidity 80.0 10 < th dose independent rect. 8 3
5 139.54 humidity 80.0 30 < th dose independent rect. 3 8
10 139.73 radiation 10.0 30 > th dose independent rect. 8 3
31 140.43 humidity 80.0 30 < th dose independent rect. 22 13
36 140.49 humidity 90.0 30 < th dose dependent rect. 8 3
39 140.52 radiation 1.0 30 > th dose dependent rect. 8 3
45 140.69 humidity 90.0 90 < th dose dependent rect. 8 1
46 140.69 atmosphere 1005.0 10 > th dose dependent rect. 8 3
71 140.93 radiation 20.0 720 > th dose independent rect. 8 1
72 140.94 humidity 90.0 720 < th dose independent rect. 9 4
74 140.96 humidity 90.0 30 < th dose dependent rect. 24 11
82 141.04 radiation 1.0 720 > th dose dependent rect. 8 1
90 141.11 humidity 90.0 30 < th dose dependent rect. 3 8
109 141.27 radiation 10.0 90 > th dose dependent rect. 17 17
110 141.28 atmosphere 1005.0 90 > th dose independent rect. 7 4
141 141.36 temperature 25.0 10 > th dose dependent rect. 8 3
143 141.37 temperature 15.0 10 > th dose dependent rect. 8 3
157 141.44 wind 7.0 10 < th dose independent rect. 8 3
161 141.47 radiation 40.0 90 > th dose independent rect. 8 1
164 141.47 humidity 60.0 10 > th dose independent rect. 8 3
200 141.56 humidity 90.0 30 < th dose dependent rect. 21 14
205 141.60 wind 1.0 30 > th dose independent rect. 8 3
210 141.63 atmosphere 1005.0 10 > th dose independent rect. 8 3
216 141.65 temperature 25.0 30 > th dose independent rect. 8 3
226 141.72 humidity 50.0 10 > th dose independent rect. 11 21
244 141.75 temperature 10.0 10 > th dose independent rect. 8 3
248 141.75 atmosphere 995.0 10 > th dose independent rect. 8 3
249 141.75 atmosphere 1015.0 10 < th dose independent rect. 8 3
251 141.75 precipitation 0.1 10 < th dose independent rect. 8 3
252 141.75 temperature 10.0 10 > th dose independent rect. 11 21
253 141.75 precipitation 0.1 10 < th dose dependent rect. 8 3
263 141.76 temperature 15.0 90 > th dose independent rect. 23 12
279 141.77 temperature 15.0 1440 > th dose independent rect. 12 12
282 141.78 wind 1.0 90 > th dose independent rect. 8 1
284 141.78 temperature 10.0 1440 > th dose independent rect. 9 3
287 141.78 atmosphere 995.0 1440 > th dose independent rect. 9 3
291 141.78 temperature 10.0 1440 > th dose independent rect. 12 21
305 141.83 radiation 40.0 90 > th dose dependent rect. 8 1
326 141.87 humidity 80.0 30 < th dose independent rect. 17 18
327 141.87 humidity 80.0 30 < th dose independent rect. 13 22
334 141.94 atmosphere 1005.0 270 > th dose independent rect. 7 1
337 141.96 wind 9.0 30 < th dose independent rect. 11 21
338 141.96 wind 9.0 10 < th dose dependent rect. 8 3
342 141.98 precipitation 0.1 10 < th dose independent rect. 11 21
343 141.98 precipitation 0.1 10 < th dose dependent rect. 11 21
346 142.00 temperature 15.0 90 > th dose dependent rect. 8 1
353 142.03 atmosphere 995.0 90 > th dose dependent rect. 8 1
355 142.05 wind 1.0 90 > th dose independent rect. 11 12
363 142.11 wind 7.0 90 < th dose independent rect. 23 12
365 142.11 atmosphere 995.0 10 > th dose independent rect. 11 21
367 142.12 wind 1.0 720 > th dose independent rect. 11 1
377 142.14 temperature 10.0 90 > th dose independent rect. 11 12
379 142.14 atmosphere 995.0 90 > th dose independent rect. 23 12
391 142.18 wind 3.0 720 > th dose dependent rect. 7 1
393 142.19 humidity 90.0 1440 > th dose independent rect. 18 7
412 142.21 wind 5.0 30 < th dose independent rect. 8 19
413 142.22 wind 7.0 90 < th dose independent rect. 8 1
415 142.22 temperature 10.0 90 > th dose independent rect. 8 1
417 142.22 humidity 50.0 90 > th dose independent rect. 8 1
418 142.22 atmosphere 995.0 90 > th dose independent rect. 8 1
419 142.22 atmosphere 1015.0 90 < th dose independent rect. 8 1
420 142.22 precipitation 0.1 90 < th dose independent rect. 8 1
422 142.22 temperature 10.0 90 > th dose independent rect. 9 23
424 142.22 precipitation 0.1 90 < th dose dependent rect. 8 1
426 142.23 temperature 20.0 720 > th dose independent rect. 6 2
432 142.23 wind 1.0 90 > th dose dependent rect. 8 1
439 142.25 atmosphere 1015.0 10 < th dose independent rect. 11 21
459 142.31 wind 1.0 720 > th dose independent rect. 9 4
460 142.31 wind 5.0 90 < th dose independent rect. 7 10
461 142.31 wind 7.0 90 < th dose independent rect. 11 12
491 142.36 precipitation 0.1 90 < th dose independent rect. 23 12
496 142.36 atmosphere 1005.0 10 > th dose dependent rect. 24 11
497 142.36 precipitation 0.1 90 < th dose dependent rect. 23 12
515 142.37 temperature 25.0 30 > th dose dependent rect. 23 12
551 142.46 wind 5.0 1440 < th dose independent rect. 7 1
575 142.47 wind 9.0 30 < th dose dependent rect. 8 19
586 142.50 wind 1.0 30 > th dose independent rect. 23 12
593 142.52 humidity 90.0 1440 < th dose independent rect. 19 2
604 142.52 atmosphere 1015.0 90 < th dose independent rect. 11 12
610 142.53 radiation 40.0 720 > th dose independent rect. 15 18
614 142.55 wind 7.0 720 < th dose independent rect. 9 4
633 142.57 wind 1.0 720 > th dose independent rect. 23 1
634 142.57 precipitation 0.1 720 < th dose independent rect. 21 4
636 142.57 wind 9.0 720 < th dose independent rect. 13 20
637 142.57 temperature 15.0 720 > th dose independent rect. 1 20
639 142.57 precipitation 0.1 720 < th dose dependent rect. 21 4
640 142.57 wind 5.0 1440 > th dose dependent rect. 4 5
644 142.58 radiation 10.0 4320 < th dose independent rect. 17 3
658 142.59 wind 1.0 720 > th dose dependent rect. 11 1
672 142.61 humidity 50.0 90 > th dose independent rect. 23 12
676 142.61 temperature 25.0 270 > th dose dependent rect. 23 9
677 142.62 radiation 40.0 720 > th dose independent rect. 8 1
704 142.63 temperature 15.0 720 > th dose independent rect. 21 4
706 142.63 radiation 40.0 4320 < th dose dependent rect. 18 10
707 142.63 humidity 50.0 10 > th dose dependent rect. 11 21
729 142.65 wind 9.0 720 < th dose independent rect. 21 4
731 142.65 temperature 30.0 720 < th dose independent rect. 21 4
732 142.65 humidity 50.0 720 > th dose independent rect. 21 4
735 142.65 atmosphere 995.0 720 > th dose independent rect. 21 4
736 142.65 radiation 1.0 720 < th dose independent rect. 21 4
744 142.65 radiation 1.0 4320 > th dose dependent rect. 18 1
751 142.65 radiation 1.0 720 < th dose dependent rect. 21 4
777 142.66 humidity 60.0 4320 < th dose independent rect. 17 1
780 142.66 radiation 10.0 4320 < th dose independent rect. 17 6
783 142.66 radiation 40.0 4320 < th dose dependent rect. 18 2
790 142.67 radiation 10.0 4320 < th dose independent rect. 17 9
794 142.67 temperature 25.0 30 > th dose dependent rect. 3 8
815 142.69 wind 9.0 90 < th dose dependent rect. 8 1
818 142.70 humidity 90.0 1440 > th dose independent rect. 23 2
820 142.70 precipitation 0.1 720 < th dose independent rect. 9 4
824 142.70 precipitation 0.1 720 < th dose dependent rect. 9 4
830 142.71 wind 9.0 1440 < th dose independent rect. 9 1
831 142.71 humidity 90.0 1440 > th dose independent rect. 18 4
840 142.72 atmosphere 1015.0 720 < th dose independent rect. 9 4
841 142.72 wind 7.0 1440 < th dose independent rect. 2 7
842 142.72 atmosphere 1015.0 90 < th dose independent rect. 23 12
845 142.72 temperature 15.0 720 > th dose independent rect. 24 23
852 142.73 radiation 20.0 90 > th dose independent sin 11 NA
856 142.73 temperature 15.0 720 > th dose independent rect. 9 12
857 142.73 humidity 60.0 10 > th dose independent rect. 23 12
858 142.73 wind 9.0 720 < th dose independent rect. 21 14
868 142.74 humidity 90.0 1440 < th dose independent rect. 18 9
882 142.74 wind 1.0 90 > th dose dependent rect. 11 10
913 142.76 temperature 20.0 720 > th dose independent rect. 11 1
987 142.80 radiation 10.0 10 < th dose independent rect. 3 11
994 142.80 humidity 80.0 1440 > th dose dependent rect. 17 8
995 142.80 radiation 10.0 90 > th dose dependent rect. 13 21