BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0528800 Os08g0528800|AK122011
         (538 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07210.1  | chr3:2293000-2295119 REVERSE LENGTH=548            308   3e-84

>AT3G07210.1 | chr3:2293000-2295119 REVERSE LENGTH=548
          Length = 547

 Score =  308 bits (790), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 221/542 (40%), Positives = 289/542 (53%), Gaps = 46/542 (8%)

Query: 1   MGVLGDGSGWCFCSGGAKLERIKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLIHRALL 60
           MGV+ D   WCFC G  K E++K                             FLIHR LL
Sbjct: 1   MGVILDS--WCFCKGVGKSEKMKGSIFTGKAPAMARISVSGPNGVTSGTG--FLIHRNLL 56

Query: 61  LTTHGTIPSXXXXXXXEVRLSHGRLPARLVPQRFFITSPILDLTIVGLDVVNDELNSHGQ 120
           LTTH  +PS       EVRL +G + A L P RFFITS ++DLTIVGLD+V+ + +S  Q
Sbjct: 57  LTTHLNLPSISATETAEVRLQNG-VAAALFPHRFFITSSVIDLTIVGLDLVDGDSSSQSQ 115

Query: 121 Q---PHFLKTCLNPSLDLGSTVLLLGHTKRKDLTIGEGKVIITTDNLIKFSTDEVAWYPG 177
               PH+LKTC  P+LDLGS V LLG+  + +L IGEGK+++ TDNLIK STDE+ W PG
Sbjct: 116 LQQQPHYLKTCSKPNLDLGSVVYLLGYANQNELKIGEGKLVVATDNLIKLSTDEMIWSPG 175

Query: 178 SAGFDMHGNLAFMVCDPMKLAPSTPTGYXXXXXXXXXXXKKDVPTQFGMPIPAVCGWLKQ 237
           SAGFD+ GNLAFM+CDP KL+ S  +              K +  QFG+PIP +C WL Q
Sbjct: 176 SAGFDVQGNLAFMICDPRKLSTSPTSTSSSSSSSLKKDNNKTLMMQFGIPIPVICDWLNQ 235

Query: 238 HWNGNL-EDVSKPMMPPARLISTGQRSE--CSSVGRLNYIKTMEREGGDGMSSSQIPPRL 294
           HW G+L E  +KP +P  RL+S+GQ+SE  C+S       K  +       SSS      
Sbjct: 236 HWEGSLDEHTTKPKLPLIRLMSSGQKSERSCTSFTMRRVFKPNDSADVGTPSSSNT---R 292

Query: 295 TQHHGSCSSASAKIS-----------CGEN---DSVDSHSIHEQQDLTSQMHESKIEQSA 340
            Q H S S A+ +             CG       + +  I+E   LTS    ++  Q  
Sbjct: 293 DQTHPSSSIAAEEEKEEETSKTNPQVCGTTTHAQGIPTPEIYESPKLTSGPLRNETAQ-V 351

Query: 341 SLMDNNFPPGHPRSIRLPLPLKHMMS-HENKIKPNPSFSHEAQLANVRINCGTLHNVAYQ 399
            L+D NFPP  P++I     L  + S H  +     S   +AQ+A+     G L  V   
Sbjct: 352 HLLDINFPPRIPKAITFHPELNSLQSNHIVEEAEIVSEGSDAQIASTGSVNGALSEVI-- 409

Query: 400 ENCWSEAQSSSSPPDISELGDERGGFSSGEETMYSAETRESRNIPSPKEKNP---KMVGR 456
                    SSSPP  +       G+SS EETMYSAET ESRN P+P  K+    + VGR
Sbjct: 410 ---------SSSPPAAAHYVYNNHGYSSEEETMYSAETAESRNYPTPPRKSEFHHERVGR 460

Query: 457 SQSFVNHSKWDSP-KSVESSKGAPSKSHTFIPLRKPHLQAAAISQKSQDFFSPTVSSSMK 515
           SQS V+ S+W +P KS+   +    K  +F+  +K H Q  A+SQ+S D++SPTVSS MK
Sbjct: 461 SQSCVSSSRWGTPQKSLNGRREMLEKQRSFVHGKKMHSQ-GAMSQRSNDYYSPTVSSIMK 519

Query: 516 KR 517
           KR
Sbjct: 520 KR 521



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.130    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,768,201
Number of extensions: 505052
Number of successful extensions: 1363
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1354
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 435
Effective length of database: 8,282,721
Effective search space: 3602983635
Effective search space used: 3602983635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 114 (48.5 bits)