BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0526500 Os08g0526500|AK073431
(237 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0526500 Similar to SOX-1 protein 333 5e-92
Os04g0378200 Sterile alpha motif SAM domain containing protein 90 1e-18
>Os08g0526500 Similar to SOX-1 protein
Length = 237
Score = 333 bits (855), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 171/216 (79%), Positives = 171/216 (79%)
Query: 1 MYSDSVSGRKRSVMDRLXXXXXXXXXXXXXXXXXXXXXRPRPDSVKRFRQADGTWRRELY 60
MYSDSVSGRKRSVMDRL RPRPDSVKRFRQADGTWRRELY
Sbjct: 1 MYSDSVSGRKRSVMDRLGSGGGGGGGGGGGGGGGGGGSRPRPDSVKRFRQADGTWRRELY 60
Query: 61 MDXXXXXXXXXXXXRNIQGNQKPHLQQNTQVMRKSSVPDLREKLSGVQRPQLNSTVQIPK 120
MD RNIQGNQKPHLQQNTQVMRKSSVPDLREKLSGVQRPQLNSTVQIPK
Sbjct: 61 MDSVGVQSSSGVPSRNIQGNQKPHLQQNTQVMRKSSVPDLREKLSGVQRPQLNSTVQIPK 120
Query: 121 SVPEISTSAKPVQKREPVQKREPPVNAALPATKKVNEPSAPKQCQEKTXXXXXXXXXXXX 180
SVPEISTSAKPVQKREPVQKREPPVNAALPATKKVNEPSAPKQCQEKT
Sbjct: 121 SVPEISTSAKPVQKREPVQKREPPVNAALPATKKVNEPSAPKQCQEKTDSSLDRLLKSLD 180
Query: 181 VEKYSINFQAEEVDMKALLHMNEEDMKSLGIPMGPR 216
VEKYSINFQAEEVDMKALLHMNEEDMKSLGIPMGPR
Sbjct: 181 VEKYSINFQAEEVDMKALLHMNEEDMKSLGIPMGPR 216
>Os04g0378200 Sterile alpha motif SAM domain containing protein
Length = 215
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 101/219 (46%), Gaps = 18/219 (8%)
Query: 1 MYSDSVS-GRKRSVMDRLXXXXXXXXXXXXXXXXXXXXXRPRPDSVKRFRQADGTWRREL 59
MY+D +S GRKRS+ DR+ P S KR RQ D W+ +L
Sbjct: 1 MYADQISTGRKRSIHDRIDGDQPAARAGAGAGGRGARN----PPS-KRQRQTDEKWKHDL 55
Query: 60 YMDXXXXXXXXXXXXRNIQGNQKPHLQQNTQVMRKSSVPDLREKLSGVQRPQ-LNSTVQI 118
Y + QK QQ+ R S V DLRE LSG PQ +N+
Sbjct: 56 YREDDEPASKSIDPRDLRLKLQKKSSQQSFAGQRGSGVRDLREMLSGTMHPQPVNADP-- 113
Query: 119 PKSVPEISTSAKPVQKREPVQKREPPVNAALPATKKVNEP-SAPKQCQEKTXXXXXXXXX 177
PK AKP + V +RE + +KKV +P S+ K Q K
Sbjct: 114 PK--------AKPSSEIVKVTRRENADVMPVRQSKKVPKPTSSKKTSQPKADSPLDIFLK 165
Query: 178 XXXVEKYSINFQAEEVDMKALLHMNEEDMKSLGIPMGPR 216
+EKYSI FQAEEVDM AL HM + D+K+LGIPMGPR
Sbjct: 166 SLGLEKYSITFQAEEVDMAALRHMTDSDLKALGIPMGPR 204
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.126 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,827,162
Number of extensions: 190729
Number of successful extensions: 630
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 626
Number of HSP's successfully gapped: 2
Length of query: 237
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 139
Effective length of database: 11,918,829
Effective search space: 1656717231
Effective search space used: 1656717231
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 154 (63.9 bits)