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Os08g0526500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
Description : Similar to SOX-1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
27.35 | 0.246 | 8.75 | -0.733 | 0.0991 | -1.06 | -0.381 | 0.815 | -0.359 | 3.94 | 27.4 | 78 | -- | -- |
28.13 | 0.247 | 8.74 | -0.602 | 0.107 | -1.09 | -0.108 | -- | -0.331 | 4.08 | 27.3 | 79 | -- | -- |
27.66 | 0.245 | 8.75 | -0.695 | 0.11 | -1.07 | -- | 0.604 | -0.353 | 4.89 | 27.43 | 87 | -- | -- |
28.13 | 0.247 | 8.74 | -0.595 | 0.103 | -1.1 | -- | -- | -0.326 | 4.65 | 27.11 | 85 | -- | -- |
28.06 | 0.247 | 8.74 | -0.669 | -- | -1.01 | -- | 0.581 | -0.329 | -- | 27.04 | 79 | -- | -- |
44.94 | 0.314 | 8.68 | -0.324 | 0.217 | -- | 0.132 | -- | -0.0858 | 13.8 | -- | -- | -- | -- |
45.01 | 0.314 | 8.68 | -0.32 | 0.217 | -- | -- | -- | -0.0851 | 13.8 | -- | -- | -- | -- |
28.53 | 0.249 | 8.73 | -0.574 | -- | -1.03 | -- | -- | -0.311 | -- | 26.69 | 79 | -- | -- |
36.49 | 0.281 | 8.71 | -- | 0.0245 | -0.855 | -- | -- | -0.216 | 4.28 | 27 | 64 | -- | -- |
47.86 | 0.323 | 8.68 | -0.328 | -- | -- | -- | -- | -0.0899 | -- | -- | -- | -- | -- |
47.7 | 0.323 | 8.67 | -- | 0.223 | -- | -- | -- | -0.0495 | 13.8 | -- | -- | -- | -- |
36.51 | 0.281 | 8.71 | -- | -- | -0.843 | -- | -- | -0.213 | -- | 26.9 | 64 | -- | -- |
50.71 | 0.332 | 8.68 | -- | -- | -- | -- | -- | -0.0535 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance![]() |
Histogram![]() ![]() |
Local optima within top1000 grid-points
rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
---|---|---|---|---|---|---|---|---|---|
1 | 27.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
2 | 27.51 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
5 | 28.07 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
6 | 28.32 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
7 | 28.35 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
8 | 28.36 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
9 | 28.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 21 |
36 | 28.71 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
37 | 28.71 | temperature | 25 | 30 | < th | dose dependent | rect. | 13 | 23 |
39 | 28.72 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
41 | 28.73 | temperature | 25 | 30 | < th | dose dependent | rect. | 15 | 23 |
46 | 28.75 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
50 | 28.75 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
54 | 28.82 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
74 | 28.96 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
179 | 29.92 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 3 |
184 | 29.95 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 16 |
188 | 29.97 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 16 |
209 | 30.03 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
223 | 30.05 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 1 |
236 | 30.07 | humidity | 80 | 43200 | < th | dose dependent | rect. | 6 | 2 |
265 | 30.10 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 8 |
276 | 30.11 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 8 |
293 | 30.13 | temperature | 15 | 1440 | > th | dose dependent | rect. | 7 | 2 |
297 | 30.13 | temperature | 15 | 1440 | > th | dose dependent | rect. | 6 | 4 |
339 | 30.16 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 2 |
340 | 30.16 | temperature | 10 | 1440 | > th | dose dependent | sin | 7 | NA |
370 | 30.18 | temperature | 30 | 1440 | < th | dose dependent | sin | 7 | NA |
371 | 30.18 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 1 |
413 | 30.20 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
450 | 30.23 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 2 |