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Os08g0526500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to SOX-1 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.68 (0.0176) R2 : 0.00453
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0535 (0.0372) R2dN8 : 0.00584 R2N8 : 0.00453
σ : 0.332
deviance : 50.71
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
27.35 0.246 8.75 -0.733 0.0991 -1.06 -0.381 0.815 -0.359 3.94 27.4 78 -- --
28.13 0.247 8.74 -0.602 0.107 -1.09 -0.108 -- -0.331 4.08 27.3 79 -- --
27.66 0.245 8.75 -0.695 0.11 -1.07 -- 0.604 -0.353 4.89 27.43 87 -- --
28.13 0.247 8.74 -0.595 0.103 -1.1 -- -- -0.326 4.65 27.11 85 -- --
28.06 0.247 8.74 -0.669 -- -1.01 -- 0.581 -0.329 -- 27.04 79 -- --
44.94 0.314 8.68 -0.324 0.217 -- 0.132 -- -0.0858 13.8 -- -- -- --
45.01 0.314 8.68 -0.32 0.217 -- -- -- -0.0851 13.8 -- -- -- --
28.53 0.249 8.73 -0.574 -- -1.03 -- -- -0.311 -- 26.69 79 -- --
36.49 0.281 8.71 -- 0.0245 -0.855 -- -- -0.216 4.28 27 64 -- --
47.86 0.323 8.68 -0.328 -- -- -- -- -0.0899 -- -- -- -- --
47.7 0.323 8.67 -- 0.223 -- -- -- -0.0495 13.8 -- -- -- --
36.51 0.281 8.71 -- -- -0.843 -- -- -0.213 -- 26.9 64 -- --
50.71 0.332 8.68 -- -- -- -- -- -0.0535 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.30 temperature 30 90 < th dose dependent rect. 11 22
2 27.51 temperature 30 90 < th dose dependent rect. 9 23
5 28.07 temperature 30 90 < th dose dependent rect. 21 23
6 28.32 temperature 30 30 < th dose dependent rect. 23 23
7 28.35 temperature 25 30 < th dose dependent rect. 5 23
8 28.36 temperature 30 30 < th dose dependent rect. 19 23
9 28.37 temperature 30 270 < th dose dependent rect. 9 21
36 28.71 temperature 25 90 < th dose dependent rect. 3 23
37 28.71 temperature 25 30 < th dose dependent rect. 13 23
39 28.72 temperature 30 90 < th dose dependent no NA NA
41 28.73 temperature 25 30 < th dose dependent rect. 15 23
46 28.75 temperature 25 30 < th dose dependent rect. 7 23
50 28.75 temperature 25 30 < th dose dependent rect. 17 23
54 28.82 temperature 25 30 < th dose dependent rect. 1 23
74 28.96 temperature 15 90 > th dose dependent rect. 6 23
179 29.92 temperature 25 1440 < th dose dependent rect. 6 3
184 29.95 temperature 15 1440 > th dose dependent rect. 20 16
188 29.97 temperature 30 1440 < th dose dependent rect. 20 16
209 30.03 temperature 10 30 > th dose dependent no NA NA
223 30.05 temperature 10 1440 > th dose dependent rect. 22 1
236 30.07 humidity 80 43200 < th dose dependent rect. 6 2
265 30.10 temperature 30 1440 < th dose dependent rect. 3 8
276 30.11 temperature 10 1440 > th dose dependent rect. 3 8
293 30.13 temperature 15 1440 > th dose dependent rect. 7 2
297 30.13 temperature 15 1440 > th dose dependent rect. 6 4
339 30.16 temperature 20 4320 > th dose independent rect. 20 2
340 30.16 temperature 10 1440 > th dose dependent sin 7 NA
370 30.18 temperature 30 1440 < th dose dependent sin 7 NA
371 30.18 temperature 30 1440 < th dose dependent rect. 22 1
413 30.20 temperature 15 10 > th dose dependent rect. 7 23
450 30.23 temperature 20 4320 < th dose independent rect. 20 2