Os04g0378200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sterile alpha motif SAM domain containing protein.
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Os04g0378200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Sterile alpha motif SAM domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.85 | 0.168 | 12.4 | -0.528 | 0.58 | -0.115 | -0.255 | 3.8 | 0.0389 | 14.3 | 30 | 1527 | -- | -- |
| 14.17 | 0.175 | 12.3 | 0.192 | 0.601 | 0.363 | -0.28 | -- | 0.0844 | 14.4 | 29.9 | 3328 | -- | -- |
| 13.06 | 0.168 | 12.4 | -0.522 | 0.585 | -0.114 | -- | 3.91 | 0.0408 | 14.4 | 29.96 | 1588 | -- | -- |
| 14.28 | 0.176 | 12.3 | 0.197 | 0.572 | 0.354 | -- | -- | 0.103 | 14.4 | 29.8 | 3950 | -- | -- |
| 32.07 | 0.264 | 12.4 | -0.649 | -- | -0.101 | -- | 4.35 | 0.00879 | -- | 30 | 2617 | -- | -- |
| 18.47 | 0.201 | 12.3 | 0.11 | 0.608 | -- | -0.188 | -- | 0.137 | 14.4 | -- | -- | -- | -- |
| 18.59 | 0.202 | 12.3 | 0.105 | 0.607 | -- | -- | -- | 0.136 | 14.4 | -- | -- | -- | -- |
| 33.4 | 0.269 | 12.3 | 0.197 | -- | 0.387 | -- | -- | 0.105 | -- | 29.63 | 2628 | -- | -- |
| 15.24 | 0.182 | 12.3 | -- | 0.581 | 0.318 | -- | -- | 0.0942 | 14.4 | 29.7 | 4294 | -- | -- |
| 40.4 | 0.297 | 12.3 | 0.0794 | -- | -- | -- | -- | 0.121 | -- | -- | -- | -- | -- |
| 18.89 | 0.203 | 12.3 | -- | 0.605 | -- | -- | -- | 0.124 | 14.4 | -- | -- | -- | -- |
| 34.37 | 0.273 | 12.3 | -- | -- | 0.429 | -- | -- | 0.0935 | -- | 29.4 | 3935 | -- | -- |
| 40.56 | 0.297 | 12.3 | -- | -- | -- | -- | -- | 0.112 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.58 | humidity | 60 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 2 | 11.60 | humidity | 60 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 11 | 12.15 | humidity | 70 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 12 | 12.18 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 13 | 12.20 | humidity | 70 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 15 | 12.21 | humidity | 70 | 14400 | > th | dose independent | sin | 11 | NA |
| 20 | 12.24 | humidity | 70 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 24 | 12.26 | humidity | 70 | 14400 | < th | dose independent | sin | 11 | NA |
| 27 | 12.26 | humidity | 80 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 40 | 12.33 | humidity | 80 | 14400 | < th | dose dependent | sin | 15 | NA |
| 55 | 12.36 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 17 |
| 62 | 12.37 | humidity | 80 | 14400 | < th | dose dependent | rect. | 10 | 19 |
| 74 | 12.38 | humidity | 80 | 14400 | < th | dose dependent | rect. | 12 | 17 |
| 80 | 12.39 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 19 |
| 83 | 12.39 | humidity | 80 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 135 | 12.43 | humidity | 70 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 181 | 12.45 | humidity | 80 | 14400 | < th | dose dependent | no | NA | NA |
| 194 | 12.45 | humidity | 80 | 14400 | < th | dose dependent | rect. | 1 | 23 |
| 201 | 12.45 | humidity | 80 | 14400 | < th | dose dependent | rect. | 23 | 23 |
| 229 | 12.47 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 349 | 12.52 | humidity | 50 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 355 | 12.53 | humidity | 60 | 14400 | > th | dose independent | rect. | 11 | 8 |
| 379 | 12.54 | humidity | 70 | 14400 | < th | dose independent | no | NA | NA |
| 380 | 12.54 | humidity | 70 | 14400 | < th | dose independent | rect. | 7 | 13 |
| 390 | 12.54 | humidity | 70 | 14400 | > th | dose independent | rect. | 7 | 17 |
| 468 | 12.55 | humidity | 70 | 14400 | > th | dose independent | no | NA | NA |
| 470 | 12.55 | humidity | 70 | 14400 | > th | dose independent | rect. | 8 | 12 |
| 549 | 12.55 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 23 |
| 554 | 12.56 | humidity | 70 | 14400 | < th | dose independent | sin | 3 | NA |
| 590 | 12.58 | humidity | 70 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 618 | 12.58 | humidity | 50 | 14400 | > th | dose dependent | rect. | 19 | 3 |
| 624 | 12.58 | humidity | 50 | 14400 | > th | dose dependent | rect. | 10 | 13 |
| 688 | 12.60 | humidity | 70 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 731 | 12.61 | humidity | 70 | 14400 | > th | dose independent | sin | 2 | NA |
| 739 | 12.61 | humidity | 60 | 14400 | < th | dose independent | rect. | 12 | 7 |
| 871 | 12.63 | humidity | 50 | 14400 | > th | dose dependent | rect. | 12 | 10 |
| 936 | 12.65 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 954 | 12.65 | humidity | 50 | 14400 | > th | dose dependent | sin | 20 | NA |