BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0378200 Os04g0378200|AK103076
         (215 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07170.1  | chr3:2280428-2282097 FORWARD LENGTH=204            166   8e-42
AT5G48680.1  | chr5:19744725-19746053 REVERSE LENGTH=207          145   1e-35
AT1G70180.2  | chr1:26426768-26429097 FORWARD LENGTH=461           71   5e-13
AT2G45700.1  | chr2:18827216-18830505 REVERSE LENGTH=724           51   4e-07

>AT3G07170.1 | chr3:2280428-2282097 FORWARD LENGTH=204
          Length = 203

 Score =  166 bits (420), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 100/217 (46%), Positives = 130/217 (59%), Gaps = 18/217 (8%)

Query: 1   MYADQIS--TGRKRSIHDRIDGDQPXXXXXXXXXXXXXXNPPSKRQRQTDEKWKHDLYRE 58
           MYAD++   +G ++ + DRI+G                     KRQRQ D+KW+HDL+  
Sbjct: 1   MYADKLEAESGSRKVVKDRING-------GSGDISTRVRQVTGKRQRQ-DDKWEHDLFSS 52

Query: 59  DD-EPASKSIDPRDLRLKLQKKSSQQSFAGQRGSGVRDLREMLSGTMHPQPVNADPPKAK 117
           D  + +++ +DPRDLRLKLQK+        + GSGVRDLR+ LSGTM+ QP N+DPPK+K
Sbjct: 53  DKPQLSNRRVDPRDLRLKLQKRHHGSQSGREAGSGVRDLRDQLSGTMNQQPKNSDPPKSK 112

Query: 118 PSSEIVKVTRRENADVMPVRXXXXXXXXXXXXXXXXXXADSPLDIFLKSLGLEKYSITFQ 177
             +E  + + +  A     R                  ADS +D FL+SLGLEKYS  FQ
Sbjct: 113 --AEAARPSMKSVATETETRKTSSQATRKKSQQ-----ADSSVDSFLESLGLEKYSTAFQ 165

Query: 178 AEEVDMAALRHMTDSDLKALGIPMGPRKKIMLALESR 214
            EEVDM AL HMTD DLKA+ IPMGPRKKI+LAL S+
Sbjct: 166 VEEVDMDALMHMTDDDLKAMLIPMGPRKKILLALGSK 202



>AT5G48680.1 | chr5:19744725-19746053 REVERSE LENGTH=207
          Length = 206

 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/173 (49%), Positives = 106/173 (61%), Gaps = 13/173 (7%)

Query: 42  KRQRQTDEKWKHDLYREDDEP--ASKSIDPRDLRLKLQKKSSQQSFAGQRGS-GVRDLRE 98
           KR RQ D+KW+HDL+ +DDEP  + + +DP+DLRLKLQKK       G+  S  V DLR+
Sbjct: 39  KRGRQDDDKWEHDLFEDDDEPRLSKRRVDPKDLRLKLQKKRHGSQIGGRVFSVSVADLRD 98

Query: 99  MLSGTMHPQPVNADPPKAKPSSEIVKVTRRENADVMPVRXXXXXXXXXXXXXXXXXXADS 158
            LS T++PQ  N+     +P+ + V V  +      P R                   D+
Sbjct: 99  KLSRTVNPQTKNSKREAVRPAIKKVSVGTKPETRAAPNRATKKDPQQN----------DA 148

Query: 159 PLDIFLKSLGLEKYSITFQAEEVDMAALRHMTDSDLKALGIPMGPRKKIMLAL 211
            +D FL+SLGLEKYS  FQ EEVDM ALRHMTD DLKAL IPMGPRKKI+LAL
Sbjct: 149 SVDSFLESLGLEKYSTAFQVEEVDMDALRHMTDDDLKALLIPMGPRKKILLAL 201



>AT1G70180.2 | chr1:26426768-26429097 FORWARD LENGTH=461
          Length = 460

 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 43/59 (72%), Gaps = 2/59 (3%)

Query: 157 DSPLDI--FLKSLGLEKYSITFQAEEVDMAALRHMTDSDLKALGIPMGPRKKIMLALES 213
           D PL +  FL S+GL KYS+ F+ EEVDM  ++ M +SDLK L IPMGPRKKI+ A+ S
Sbjct: 398 DEPLSVDGFLNSIGLGKYSLAFKREEVDMTTIKQMKESDLKDLIIPMGPRKKILQAIAS 456



>AT2G45700.1 | chr2:18827216-18830505 REVERSE LENGTH=724
          Length = 723

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 38/55 (69%), Gaps = 1/55 (1%)

Query: 158 SPLDIFLKSLGLEKYSITFQAEEVDMAALRHMTDSDLKALGIP-MGPRKKIMLAL 211
           SP+  +L+SLGL KY   F  EE+D   L+ +T+ DL ++GI  +GPRKKI+ AL
Sbjct: 242 SPVLKWLRSLGLAKYEDVFIREEIDWDTLQSLTEEDLLSIGITSLGPRKKIVNAL 296



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,957,518
Number of extensions: 141467
Number of successful extensions: 342
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 4
Length of query: 215
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 121
Effective length of database: 8,529,465
Effective search space: 1032065265
Effective search space used: 1032065265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 109 (46.6 bits)