BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0523600 Os08g0523600|AK063901
         (96 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0523600  Similar to CTV.22                                   193   3e-50
Os08g0564800  Conserved hypothetical protein                      124   2e-29

>Os08g0523600 Similar to CTV.22
          Length = 96

 Score =  193 bits (490), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 96/96 (100%), Positives = 96/96 (100%)

Query: 1  PVSGPEGLNELQKLAVRFEEKIYTGATSRSDYLRKLSLKMLSLETKTQQSPGNAQVIQNQ 60
          PVSGPEGLNELQKLAVRFEEKIYTGATSRSDYLRKLSLKMLSLETKTQQSPGNAQVIQNQ
Sbjct: 1  PVSGPEGLNELQKLAVRFEEKIYTGATSRSDYLRKLSLKMLSLETKTQQSPGNAQVIQNQ 60

Query: 61 NPPGSGVTMLPKKHLSGAQKRNKRKRGDQLIGSQKK 96
          NPPGSGVTMLPKKHLSGAQKRNKRKRGDQLIGSQKK
Sbjct: 61 NPPGSGVTMLPKKHLSGAQKRNKRKRGDQLIGSQKK 96



>Os08g0564800 Conserved hypothetical protein
          Length = 1320

 Score =  124 bits (310), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/65 (89%), Positives = 63/65 (96%)

Query: 1   PVSGPEGLNELQKLAVRFEEKIYTGATSRSDYLRKLSLKMLSLETKTQQSPGNAQVIQNQ 60
           PVS PEGLNELQK+AVRFEEKIYT ATS+SDYLRK+SLKMLS+ETKTQQ+PGNAQVIQNQ
Sbjct: 62  PVSVPEGLNELQKIAVRFEEKIYTAATSQSDYLRKISLKMLSMETKTQQNPGNAQVIQNQ 121

Query: 61  NPPGS 65
           NPPGS
Sbjct: 122 NPPGS 126



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.308    0.127    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,195,302
Number of extensions: 107665
Number of successful extensions: 213
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 2
Length of query: 96
Length of database: 17,035,801
Length adjustment: 65
Effective length of query: 31
Effective length of database: 13,641,891
Effective search space: 422898621
Effective search space used: 422898621
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 149 (62.0 bits)