Os08g0523600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CTV.22.
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Os08g0523600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CTV.22.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 240.83 | 0.729 | 7.74 | -1.91 | 0.902 | 2.11 | -1.51 | -6.02 | -0.716 | 6.43 | 21.04 | 1771 | -- | -- |
| 259.91 | 0.751 | 7.6 | -0.762 | 0.697 | 2.29 | -1.4 | -- | -0.521 | 6.45 | 14.53 | 9052 | -- | -- |
| 246.41 | 0.731 | 7.73 | -1.86 | 0.89 | 2.09 | -- | -5.76 | -0.692 | 6.47 | 20.86 | 1767 | -- | -- |
| 263.14 | 0.756 | 7.59 | -0.784 | 0.718 | 2.44 | -- | -- | -0.487 | 6.56 | 7.625 | 7478 | -- | -- |
| 278.1 | 0.777 | 7.76 | -1.92 | -- | 1.92 | -- | -5.43 | -0.66 | -- | 20.47 | 2817 | -- | -- |
| 357.25 | 0.886 | 7.45 | 0.465 | 0.736 | -- | -1.28 | -- | 0.173 | 6.24 | -- | -- | -- | -- |
| 361.32 | 0.89 | 7.44 | 0.451 | 0.73 | -- | -- | -- | 0.177 | 6.26 | -- | -- | -- | -- |
| 287.68 | 0.79 | 7.6 | -0.769 | -- | 2.43 | -- | -- | -0.453 | -- | 8.134 | 7164 | -- | -- |
| 274.06 | 0.771 | 7.52 | -- | 0.758 | 1.99 | -- | -- | -0.163 | 6.66 | 12.29 | 4862 | -- | -- |
| 388.96 | 0.922 | 7.46 | 0.47 | -- | -- | -- | -- | 0.193 | -- | -- | -- | -- | -- |
| 366.67 | 0.896 | 7.46 | -- | 0.736 | -- | -- | -- | 0.127 | 6.23 | -- | -- | -- | -- |
| 293.42 | 0.798 | 7.53 | -- | -- | 1.61 | -- | -- | -0.137 | -- | 22.4 | 5784 | -- | -- |
| 394.8 | 0.927 | 7.47 | -- | -- | -- | -- | -- | 0.141 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 228.61 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 2 | 230.26 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 13 | 234.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 17 | 236.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 19 | 237.11 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 22 | 237.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 26 | 237.76 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 30 | 238.30 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 62 | 240.56 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 72 | 240.82 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 105 | 242.55 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 107 | 242.60 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 109 | 242.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 19 |
| 114 | 242.79 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 126 | 242.87 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 166 | 243.80 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 21 |
| 189 | 244.23 | humidity | 90 | 14400 | > th | dose dependent | sin | 15 | NA |
| 223 | 244.86 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 21 |
| 256 | 245.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 21 |
| 288 | 245.83 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 294 | 245.84 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 295 | 245.85 | temperature | 25 | 4320 | > th | dose independent | rect. | 2 | 14 |
| 338 | 246.23 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 13 |
| 377 | 246.54 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 410 | 246.81 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 9 |
| 428 | 246.97 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 438 | 247.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 17 |
| 451 | 247.12 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 453 | 247.13 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 466 | 247.15 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 493 | 247.29 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 523 | 247.49 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 561 | 247.73 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 21 |
| 566 | 247.75 | temperature | 20 | 4320 | > th | dose dependent | sin | 1 | NA |
| 572 | 247.79 | wind | 7 | 43200 | > th | dose dependent | rect. | 2 | 13 |
| 594 | 247.92 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 602 | 247.97 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 16 |
| 646 | 248.17 | wind | 9 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 656 | 248.22 | wind | 9 | 43200 | < th | dose independent | rect. | 2 | 13 |
| 660 | 248.23 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 683 | 248.33 | wind | 9 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 714 | 248.50 | temperature | 20 | 4320 | > th | dose dependent | rect. | 12 | 2 |
| 810 | 248.91 | wind | 7 | 43200 | > th | dose dependent | rect. | 2 | 19 |
| 812 | 248.92 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 843 | 249.04 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 851 | 249.07 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 21 |
| 854 | 249.10 | temperature | 25 | 4320 | < th | dose independent | sin | 3 | NA |
| 855 | 249.10 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 857 | 249.11 | wind | 7 | 43200 | > th | dose dependent | sin | 1 | NA |
| 860 | 249.11 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 878 | 249.16 | temperature | 25 | 4320 | > th | dose independent | sin | 3 | NA |
| 988 | 249.57 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 998 | 249.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |