BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0523600 Os08g0523600|AK063901
         (96 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15780.1  | chr1:5430446-5435921 REVERSE LENGTH=1336            82   7e-17
AT1G15790.1  | chr1:5438477-5439820 REVERSE LENGTH=180             69   6e-13

>AT1G15780.1 | chr1:5430446-5435921 REVERSE LENGTH=1336
          Length = 1335

 Score = 81.6 bits (200), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 56/71 (78%), Gaps = 1/71 (1%)

Query: 1   PVSGPEGLNELQKLAVRFEEKIYTGATSRSDYLRKLSLKMLSLETKTQQSPGNAQVIQNQ 60
           P SGPEG+NEL+++A RFEEKI++GA +++DYLRK+S+KML++ETK+Q + G++  I   
Sbjct: 47  PFSGPEGINELRRIAARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAA 106

Query: 61  NPPGSGVTMLP 71
           N  G+ +  +P
Sbjct: 107 N-NGTSIDSIP 116



>AT1G15790.1 | chr1:5438477-5439820 REVERSE LENGTH=180
          Length = 179

 Score = 68.6 bits (166), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 47/62 (75%)

Query: 1  PVSGPEGLNELQKLAVRFEEKIYTGATSRSDYLRKLSLKMLSLETKTQQSPGNAQVIQNQ 60
          P   PEG NEL+K+AVRFEEK++  A+++++YLR++ +KML++ETK+Q + G++    N 
Sbjct: 32 PFIRPEGTNELRKIAVRFEEKLFNNASNQTEYLRQICMKMLNMETKSQNAAGSSSADDNT 91

Query: 61 NP 62
           P
Sbjct: 92 PP 93




 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 31/43 (72%)

Query: 1   PVSGPEGLNELQKLAVRFEEKIYTGATSRSDYLRKLSLKMLSL 43
           P SG EG++EL ++AV  EE I+  A ++ DYL K+SLKM ++
Sbjct: 137 PHSGKEGIDELMRIAVSLEELIFNSAINQEDYLGKISLKMRTM 179



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.308    0.127    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,044,361
Number of extensions: 70702
Number of successful extensions: 147
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 3
Length of query: 96
Length of database: 11,106,569
Length adjustment: 66
Effective length of query: 30
Effective length of database: 9,297,113
Effective search space: 278913390
Effective search space used: 278913390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 104 (44.7 bits)