BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0521800 Os08g0521800|AK067267
(260 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0521800 Conserved hypothetical protein 393 e-110
Os03g0146500 Galactose-binding like domain containing protein 94 1e-19
>Os08g0521800 Conserved hypothetical protein
Length = 260
Score = 393 bits (1009), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/260 (77%), Positives = 202/260 (77%)
Query: 1 MRLVAAKPCCLFRISSVXXXXXXXXXXXXXXXXXXXXXXXXEGDEDGQXXXXXXXXXXXX 60
MRLVAAKPCCLFRISSV EGDEDGQ
Sbjct: 1 MRLVAAKPCCLFRISSVAAVAAGRRRPWRAAAASGNAHAEAEGDEDGQSLSARARGRRAR 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXFLRQPAGVESLLNTRALQSFAAVDEAPGANTFRCTLQS 120
FLRQPAGVESLLNTRALQSFAAVDEAPGANTFRCTLQS
Sbjct: 61 LSARRRERIVVVEGGGVGGIGEFLRQPAGVESLLNTRALQSFAAVDEAPGANTFRCTLQS 120
Query: 121 IGFLGFQVAPVLDLRVAPTCHDCTVEMLSCRFEGSGSVEQQNELFSAFMSNHITWKDDGE 180
IGFLGFQVAPVLDLRVAPTCHDCTVEMLSCRFEGSGSVEQQNELFSAFMSNHITWKDDGE
Sbjct: 121 IGFLGFQVAPVLDLRVAPTCHDCTVEMLSCRFEGSGSVEQQNELFSAFMSNHITWKDDGE 180
Query: 181 EPCLDIDVNLEVTLEVYTKPFSMLPLSAVETPGNLLMQGLLDRLVPLLGEQLLRDYHSWV 240
EPCLDIDVNLEVTLEVYTKPFSMLPLSAVETPGNLLMQGLLDRLVPLLGEQLLRDYHSWV
Sbjct: 181 EPCLDIDVNLEVTLEVYTKPFSMLPLSAVETPGNLLMQGLLDRLVPLLGEQLLRDYHSWV 240
Query: 241 QLQQQQPEISSLETAEIDAS 260
QLQQQQPEISSLETAEIDAS
Sbjct: 241 QLQQQQPEISSLETAEIDAS 260
>Os03g0146500 Galactose-binding like domain containing protein
Length = 230
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 88/160 (55%), Gaps = 11/160 (6%)
Query: 83 FLRQPAGVESLLNTRALQSFAAVDEAPGANTFRCTLQSIGFLGFQVAPVLDLRVAPTCHD 142
++ PA S+L+ ++ VDE+ TFRC + F +V PVL +RV +
Sbjct: 64 YMSLPASQYSVLDAERIER---VDES----TFRCYVYRFRFFALEVCPVLLVRVDEEPNG 116
Query: 143 CTVEMLSCRFEGSGSVEQQNELFSAFMSNHI---TWKDDGEEPCLDIDVNLEVTLEVYTK 199
C + +LSC+ EGS VE QN+ FSA M N + + D L D +EVT+++
Sbjct: 117 CCISLLSCKLEGSPLVEAQNDKFSASMVNKVFCNSSMSDSTSQQLTSDTTIEVTIDI-PF 175
Query: 200 PFSMLPLSAVETPGNLLMQGLLDRLVPLLGEQLLRDYHSW 239
PF LP+ A+E+ G +++ LL ++P +QL++DY +W
Sbjct: 176 PFRALPVEAIESSGKQVLEQLLRVMLPRFLKQLVKDYQAW 215
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,767,847
Number of extensions: 242268
Number of successful extensions: 446
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 444
Number of HSP's successfully gapped: 2
Length of query: 260
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 161
Effective length of database: 11,866,615
Effective search space: 1910525015
Effective search space used: 1910525015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)