Os03g0146500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Galactose-binding like domain containing protein.
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Os03g0146500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Galactose-binding like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.07 | 0.367 | 12.1 | 1.07 | 1.71 | -1.26 | -1.05 | -1.14 | 0.185 | 5.26 | 25.48 | 109 | -- | -- |
| 61.4 | 0.365 | 12.1 | 1.2 | 1.68 | -1.36 | -0.914 | -- | 0.23 | 5.27 | 25.24 | 121 | -- | -- |
| 63.46 | 0.371 | 12.1 | 1.13 | 1.72 | -1.26 | -- | -0.351 | 0.205 | 5.28 | 25.36 | 111 | -- | -- |
| 62.83 | 0.369 | 12 | 1.25 | 1.7 | -1.28 | -- | -- | 0.34 | 5.3 | 23.07 | 127 | -- | -- |
| 145.81 | 0.562 | 12 | 2.03 | -- | -2.86 | -- | 3.74 | 0.56 | -- | 24.23 | 259 | -- | -- |
| 90.4 | 0.446 | 12.1 | 0.986 | 2.2 | -- | -0.352 | -- | 0.143 | 4.95 | -- | -- | -- | -- |
| 90.72 | 0.446 | 12.1 | 0.987 | 2.2 | -- | -- | -- | 0.145 | 4.95 | -- | -- | -- | -- |
| 150.46 | 0.571 | 12 | 1.52 | -- | -2.6 | -- | -- | 0.489 | -- | 24.26 | 242 | -- | -- |
| 99.47 | 0.465 | 12.1 | -- | 1.79 | -1.11 | -- | -- | 0.0549 | 5.18 | 25.86 | 107 | -- | -- |
| 345.74 | 0.869 | 12.1 | 1.07 | -- | -- | -- | -- | 0.201 | -- | -- | -- | -- | -- |
| 116.37 | 0.505 | 12.1 | -- | 2.22 | -- | -- | -- | 0.035 | 4.94 | -- | -- | -- | -- |
| 207.11 | 0.67 | 12.1 | -- | -- | -2.42 | -- | -- | 0.252 | -- | 24.5 | 250 | -- | -- |
| 375.78 | 0.905 | 12.1 | -- | -- | -- | -- | -- | 0.083 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.12 | temperature | 15 | 90 | > th | dose dependent | rect. | 24 | 18 |
| 4 | 54.12 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 19 |
| 7 | 54.82 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 20 | 56.09 | temperature | 10 | 90 | > th | dose dependent | sin | 21 | NA |
| 55 | 56.99 | temperature | 10 | 270 | > th | dose dependent | sin | 0 | NA |
| 69 | 57.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 16 |
| 121 | 57.95 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 314 | 60.42 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 345 | 60.78 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 16 |
| 362 | 60.90 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 367 | 60.95 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 18 |
| 440 | 61.27 | temperature | 25 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 484 | 61.47 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 485 | 61.47 | humidity | 90 | 270 | < th | dose dependent | rect. | 9 | 8 |
| 504 | 61.54 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 14 |
| 725 | 62.71 | radiation | 20 | 270 | < th | dose dependent | rect. | 7 | 15 |
| 754 | 62.82 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 789 | 62.94 | humidity | 60 | 90 | > th | dose dependent | sin | 21 | NA |
| 820 | 63.07 | radiation | 20 | 270 | < th | dose dependent | sin | 21 | NA |
| 822 | 63.08 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 10 |
| 867 | 63.30 | humidity | 80 | 270 | < th | dose dependent | rect. | 11 | 5 |
| 872 | 63.31 | humidity | 60 | 270 | > th | dose dependent | sin | 23 | NA |
| 907 | 63.46 | humidity | 60 | 270 | > th | dose dependent | rect. | 7 | 14 |
| 934 | 63.60 | radiation | 30 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 947 | 63.67 | temperature | 30 | 90 | < th | dose independent | rect. | 17 | 23 |
| 948 | 63.67 | radiation | 1 | 270 | > th | dose dependent | sin | 19 | NA |
| 981 | 63.85 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 17 |