BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0146500 Os03g0146500|AK059776
         (230 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G04440.1  | chr5:1254957-1256624 FORWARD LENGTH=256            275   2e-74
AT4G31115.2  | chr4:15130243-15131847 FORWARD LENGTH=275           92   2e-19

>AT5G04440.1 | chr5:1254957-1256624 FORWARD LENGTH=256
          Length = 255

 Score =  275 bits (702), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 129/187 (68%), Positives = 150/187 (80%)

Query: 44  FVARRSESTFVQQLARPLAEYMSLPASQYSVLDAERIERVDESTFRCYVYRFRFFALEVC 103
           F+AR+ +S  V+QL RPL EYMSLPASQYSVLDAERIERVD++TFRCYVY F+FF  EVC
Sbjct: 69  FIARQKQSVSVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVYTFKFFNFEVC 128

Query: 104 PVLLVRVDEEPNGCCISLLSCKLEGSPLVEAQNDKFSASMVNKVFCNXXXXXXXXXXXXX 163
           PVLLVRV+E+PNGCCI LLSCKLEGSP+V AQNDKF ASMVN+V C+             
Sbjct: 129 PVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDSTQEGSSEQQITS 188

Query: 164 XXXIEVTIDIPFPFRALPVEAIESSGKQVLEQLLRVMLPRFLKQLVKDYQAWASGDSSRK 223
              IEV I+IPF FR  PV AIE++G QVL+Q+L++MLPRFL QL KDY AWASGD+SR+
Sbjct: 189 DAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILKLMLPRFLSQLSKDYHAWASGDTSRQ 248

Query: 224 PLGTGEI 230
           PLGTGEI
Sbjct: 249 PLGTGEI 255



>AT4G31115.2 | chr4:15130243-15131847 FORWARD LENGTH=275
          Length = 274

 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 92/160 (57%), Gaps = 9/160 (5%)

Query: 62  AEYMSLPASQYSVLDAERIER---VDES--TFRCYVYRFRFFALEVCPVLLVRVDEEPNG 116
           +E++  P+   +V++A+ ++    VD+S  T+RC + + +  + EV PVL++RV      
Sbjct: 105 SEFLKHPSGMEAVINAKALQSYHLVDDSDDTYRCTLPKVQLMSFEVYPVLVLRVTPTQED 164

Query: 117 CCISLLSCKLEGSPLVEAQNDKFSASMVNKVFCNXXXXXXXXXXXXXXXXIEVTIDIPF- 175
           C + LLSCKLEGS L+E Q+++FSA M N   C                 + VT++I   
Sbjct: 165 CTVELLSCKLEGSELLENQSERFSAIMTN---CMTWNMEHPEPFLEVDVRLNVTLEISTR 221

Query: 176 PFRALPVEAIESSGKQVLEQLLRVMLPRFLKQLVKDYQAW 215
           PF  LPV A+E+ G  V++ L+  ++P  L+QL+KDY  W
Sbjct: 222 PFTMLPVSAVEAPGNLVMQTLVDTLVPLLLQQLLKDYDEW 261



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,459,163
Number of extensions: 118595
Number of successful extensions: 199
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 2
Length of query: 230
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 135
Effective length of database: 8,502,049
Effective search space: 1147776615
Effective search space used: 1147776615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 110 (47.0 bits)